RNA id: XM_007249529.3


Basic Information

Item Value
RNA id XM_007249529.3
length 782
RNA type mRNA
GC content 0.42
exon number 4
gene id LOC103030769
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 18743206 ~ 18744327 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAAGGAGCCTGTGAAATCAGGGCATTAGACTATTCAGAATGTCGTGCACAGTACACATTCGTCCTGCTCTGCTGGCTCTGGGCCTCTGTGTCCTCTGTACGCTCCTTGCTGCTCAGCCAGGAGACGGTCAGCACGTTCCAGTCCGTTGTGTGTGCCATAAACCTCTAAAAAAGGTCCAGAAGCAGCTTTCAGACTTGGAAGTCTACTTAAAAAGACCTGGCTGTCATAAAGACGAGATCATagttacAGTGAAGGAGTCGGGCAAAAAAGTGTGTCTGAGTCCAGATGGAGATCAAGGAAAAAGAATACTGACATGCTGGCACGAAATGGAGAAAACAAAAGGAGATGTGAAGCAATGCCTTAAAAGACGGAGACGACGACCTCGGAGGAAGCACACCAGATccaaaaagaaaacactgtGATCAGTCCAGCATGAATGGAAAGAAATCTTCTTATGGATTCTTAAAGACCTGCTACTAATGTAATGGTGTCAGCACACTGCTGTAAAGGCCAGTGTGGACCATACACCACTTCAGGATTTGAACAGGACTTCCAGAGAGGGCTGGCCCCACTTAAAGTATCTATGGACAACTACAATACTAAGGACAATACaacctggacaaaaaaaaaaaacaatgtcacaTGTCAAATCCTCGGGCAGTTTTTGTAGTATTAGAAATAATATATTGCACACTGTTACTACTTGTTGAAtcttttttataacttttttatgtaatgtttgcaatgttttatacaataaatgtgtttataataatattggA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU294975 lncRNA upstream 28896 18714051 ~ 18714310 (+) True G217438
TU294971 lncRNA upstream 44055 18697993 ~ 18699151 (+) True G217435
TU294964 lncRNA upstream 47412 18688372 ~ 18695794 (+) True G217433
TU294961 lncRNA upstream 53513 18681962 ~ 18689693 (+) True G217431
TU294947 lncRNA upstream 318443 18423830 ~ 18424763 (+) True G217420
TU294986 lncRNA downstream 3065 18747392 ~ 18750080 (+) True G217442
TU294976 lncRNA downstream 9590 18753917 ~ 18758188 (+) False G217439
TU294978 lncRNA downstream 9590 18753917 ~ 18758188 (+) True G217439
TU294980 lncRNA downstream 9590 18753917 ~ 18756591 (+) False G217439
TU295017 lncRNA downstream 194698 18939025 ~ 18939903 (+) True G217472
XM_007249530.3 mRNA upstream 10685 18731597 ~ 18732521 (+) True c25h10orf10
XM_007249524.3 mRNA upstream 102331 18636068 ~ 18640875 (+) True LOC103029282
XM_022684893.1 mRNA upstream 102331 18636935 ~ 18640875 (+) False LOC103029282
XM_007249522.3 mRNA upstream 108603 18430028 ~ 18634603 (+) False LOC103028339
XM_022684782.1 mRNA downstream 93017 18837344 ~ 18847024 (+) True cxcl12
XM_007249533.3 mRNA downstream 165619 18909946 ~ 18938453 (+) True ercc6
XM_007249534.3 mRNA downstream 197921 18942248 ~ 18948011 (+) True drgx
XM_015605843.2 mRNA downstream 197924 18942251 ~ 18948011 (+) False drgx
XM_022684784.1 mRNA downstream 230732 18975059 ~ 18990050 (+) True LOC107197625
TU294912 other upstream 426382 18311906 ~ 18316824 (+) False eif4ebp2
XR_002651919.1 other upstream 1567473 17167018 ~ 17175733 (+) False LOC111195981
TU294489 other upstream 1735669 17004595 ~ 17007537 (+) True borcs7
trnat-ugu_90 other upstream 5395573 13347561 ~ 13347633 (+) True trnat-ugu_90
trnay-gua_11 other upstream 5427044 13316075 ~ 13316162 (+) True trnay-gua_11
TU295009 other downstream 93035 18837362 ~ 18847028 (+) False cxcl12
XR_002651927.1 other downstream 423536 19167863 ~ 19203516 (+) False LOC103040131
TU295347 other downstream 598667 19342994 ~ 19345401 (+) False rrp12
TU295577 other downstream 1276087 20020414 ~ 20074343 (+) True G217874
TU295704 other downstream 1667917 20412244 ~ 20415643 (+) False LOC103032529

Expression Profile