Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_022684782.1 |
| length | 3088 |
| RNA type | mRNA |
| GC content | 0.39 |
| exon number | 4 |
| gene id | cxcl12 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_035921.1 |
| NCBI id | CM008324.1 |
| chromosome length | 46505145 |
| location | 18837344 ~ 18847028 (+) |
| genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
| species | mexican tetra (Astyanax mexicanus) |
| id | name | namespace |
|---|---|---|
| GO:0042074 | cell migration involved in gastrulation | biological_process |
| GO:0090024 | negative regulation of neutrophil chemotaxis | biological_process |
| GO:0001764 | neuron migration | biological_process |
| GO:0031290 | retinal ganglion cell axon guidance | biological_process |
| GO:0006955 | immune response | biological_process |
| GO:2000472 | negative regulation of hematopoietic stem cell migration | biological_process |
| GO:0050930 | induction of positive chemotaxis | biological_process |
| GO:0009887 | animal organ morphogenesis | biological_process |
| GO:0048842 | positive regulation of axon extension involved in axon guidance | biological_process |
| GO:0030239 | myofibril assembly | biological_process |
| GO:0031101 | fin regeneration | biological_process |
| GO:0008285 | negative regulation of cell population proliferation | biological_process |
| GO:0048920 | posterior lateral line neuromast primordium migration | biological_process |
| GO:0008354 | germ cell migration | biological_process |
| GO:0030900 | forebrain development | biological_process |
| GO:0030335 | positive regulation of cell migration | biological_process |
| GO:0005576 | extracellular region | cellular_component |
| GO:0008009 | chemokine activity | molecular_function |
| GO:0042056 | chemoattractant activity | molecular_function |
| id | description |
|---|---|
| K10031 | CXCL12; C-X-C motif chemokine 12 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU294983 | lncRNA | upstream | 63933 | 18718305 ~ 18773411 (+) | False | G217439 |
| TU294976 | lncRNA | upstream | 79156 | 18753917 ~ 18758188 (+) | False | G217439 |
| TU294978 | lncRNA | upstream | 79156 | 18753917 ~ 18758188 (+) | True | G217439 |
| TU294980 | lncRNA | upstream | 80753 | 18753917 ~ 18756591 (+) | False | G217439 |
| TU294986 | lncRNA | upstream | 87264 | 18747392 ~ 18750080 (+) | True | G217442 |
| TU295017 | lncRNA | downstream | 92001 | 18939025 ~ 18939903 (+) | True | G217472 |
| XR_002651918.1 | lncRNA | downstream | 372489 | 19219513 ~ 19231760 (+) | True | LOC111195980 |
| TU295330 | lncRNA | downstream | 425913 | 19272937 ~ 19273154 (+) | True | G217696 |
| TU295359 | lncRNA | downstream | 515654 | 19362678 ~ 19365255 (+) | True | G217715 |
| TU295434 | lncRNA | downstream | 651040 | 19498064 ~ 19518320 (+) | True | G217768 |
| XM_007249529.3 | mRNA | upstream | 93017 | 18743206 ~ 18744327 (+) | True | LOC103030769 |
| XM_007249530.3 | mRNA | upstream | 104823 | 18731597 ~ 18732521 (+) | True | c25h10orf10 |
| XM_007249524.3 | mRNA | upstream | 196469 | 18636068 ~ 18640875 (+) | True | LOC103029282 |
| XM_022684893.1 | mRNA | upstream | 196469 | 18636935 ~ 18640875 (+) | False | LOC103029282 |
| XM_015605845.2 | mRNA | upstream | 202741 | 18600622 ~ 18634603 (+) | False | LOC103028339 |
| XM_007249533.3 | mRNA | downstream | 62922 | 18909946 ~ 18938453 (+) | True | ercc6 |
| XM_007249534.3 | mRNA | downstream | 95224 | 18942248 ~ 18948011 (+) | True | drgx |
| XM_015605843.2 | mRNA | downstream | 95227 | 18942251 ~ 18948011 (+) | False | drgx |
| XM_022684784.1 | mRNA | downstream | 128035 | 18975059 ~ 18990050 (+) | True | LOC107197625 |
| XM_022684785.1 | mRNA | downstream | 128227 | 18975251 ~ 18990050 (+) | False | LOC107197625 |
| TU294985 | other | upstream | 93113 | 18743233 ~ 18744231 (+) | False | LOC103030769 |
| TU294912 | other | upstream | 520520 | 18311906 ~ 18316824 (+) | False | eif4ebp2 |
| XR_002651919.1 | other | upstream | 1661611 | 17167018 ~ 17175733 (+) | False | LOC111195981 |
| TU294489 | other | upstream | 1829807 | 17004595 ~ 17007537 (+) | True | borcs7 |
| trnat-ugu_90 | other | upstream | 5489711 | 13347561 ~ 13347633 (+) | True | trnat-ugu_90 |
| XR_002651927.1 | other | downstream | 320839 | 19167863 ~ 19203516 (+) | False | LOC103040131 |
| TU295347 | other | downstream | 495970 | 19342994 ~ 19345401 (+) | False | rrp12 |
| TU295577 | other | downstream | 1173390 | 20020414 ~ 20074343 (+) | True | G217874 |
| TU295704 | other | downstream | 1565220 | 20412244 ~ 20415643 (+) | False | LOC103032529 |
| XR_002651938.1 | other | downstream | 3213942 | 22060966 ~ 22096652 (+) | False | mark3 |
