RNA id: XM_022684799.1


Basic Information

Item Value
RNA id XM_022684799.1
length 4257
RNA type mRNA
GC content 0.48
exon number 34
gene id rrp12
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 19323906 ~ 19345404 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGCGACCGCTATCCCAGCGTGGCCCGGCGTGTGCGCGTGAGAGAGCTGAGCTCCGCTAGCACGCGGTTACTGCTCCTCCAGACATGGTGAAAACAGGGAAACTGCGCTCCGGCGCctctcagaaactgaagcgctgGAAGAAAGGACACAGCAGCGACTCCAACCCGCAGACCAGCCGGTACCGACAAGCAGCGAGGAGCCGGTTTTTCAGCCGCCCCTCAGAGAAAAGCAACCTTACAGTTGATGCCCTGAAACTCCACAATGAGCTTCAGACAGGTACCCTGGAGAGAGGTGGGGATGGTGATGCCATGGAGGAGGCAGCATTCACAGAAAGAACATCTGGGACGTTTCTTAGTGGACTGTCGGACTGCTCTAATCTCACCTTTAGAAAAGTCCAGCGTTACTGGGAGTCCAACTCTGCAGCACACAAAGAGATCTGTGCTGTCTTAGCAGCTGTAACAGAAGTGATTCGCTCTCAAGGGGGGaaggagacagagacagagtaCTTTGCTGCTCTGATGACTACTCTTGAGGCAGTGGAGAGCAGCGAATCGTTGGCTGCTGTGGCCTACCTTCTGAACCTGGTAATGAAAAGGGTGCCTGCTGCAGTGCTGATAAAGAAGTTCTCAGACACAGCAAAGGCCTTTATGGAGGTCATGTCAAAACAGGCCGGCACAGACTCTGTGTCTGCTGTACGATGGATCCTGTCATGCCTGGCGACCTTGCTGAGGAAGCAGGATCTCTCAGTATGGGGTTATCCATCCACCCTTCAAGTCTACCATGGTCTGCTTAGCTTTACTGTACACGCTAAACCAAAGGTACGTAAAGCAGCCCAGCAAGGTGTTTGTTCCATTCTCCGTGGCAGTGACTGCATGTTCATAGACAATGCCCCCAGCCACCACCCTGCTGCGGTCACCACAGCCAAGTATTGCATCAAAGAAATGGAACAGGCAGGAGGCAATAAGGAAGACACTACCACTCTGCATGTGTTGGGGCTTATAAAGGAGCTGATTAATACATTCCCCCTCAGCTCTGTGAAGTCCTGTTGTGAGACACTCCTTCGAGTAATGACTCTCAGTCATGTGctggtAACAGCAGGAGCGATGCAGGCTTTCCACAAACTGTTCAGCTCTAAACCCAGCTCCTCCAGCATGTCTGCAGAGCTCAATGCCCAGATTATCATGgCTTTGTACGACTACGTCCCCAGTGAAAACGACCTGCAGCCTCTGCTAGCATGGCTTACAGTTATGGAGAAAGCCCATGTCCATCTCTCTAGTTTACAGAGCTCTCTGAGTCTGGGCCATCTCCCTCGACTTTTTGCAGCGGCCATGTCTTGTCTTCTGTCCCCACACACTCAGGTGGTCTCTGCTGCCACACAGACCCTAAAGACCCTAATCAATGAGTGTGTGGCACCTCATATGGCAGAGATTGGGCCTGTTCTGCCCAGCACATCTACTGGCAATGGACTTTCTGTCATTAAGATGTTCCGTGTTGTGGAAGAAGGCCTGTCATATCGCTTCCACGCCACCTGGCCGTTCGTGCTGCAGATTCTTGGCTGCTTCTACAAAGCTGCAGGGAAACAAGCCCACCCCATAATGATCAAGAGTCTGCAGTCCTTGAGTGATCTGCGGGTCACTCCAAGCTTCCCCTTCTGTGGAGAACTGGACTTGGCCATGGGGGCTGCAGTTGAAAGCATGGGCCCACAGGTGGTCCTGAGTGCTGTCCCCCTGCAAATCACTGGCATAGATGATGACATGGAGTTTCCACACAGCTGGCTCATCCCAGTGATCAGGGACCATGTGAAAAACACTCAGCTCAGTTATTTCACCTCTTACTTCCTTCCATTGGCTTCAACTCTAAAACAAAAAGctgAAGAGTTGGAGAAATCAGGACAGAAACTGTGTGCTAAAGTATACCAGACATTGCAGTTGCAGATTTGGACAATGCTTCCTGGTTTCTGCAATAAGCCCACTGACCTGATCAGTTCCTTTAAGAATATGGCCCGATCTCTGGGTATGGCCATCAGTGAAAGACCTGAGCTCCGAATGTGCATTTACCAATCCCTGCGAACACTCATCTACAAGAGCTGTGAAACAGAGGAGGAGAAGGCTGAAGTTGGCAGATATGCTAAGAACTTCCTGCCCATTTTGTTTAATGTGCACACCCAGCAGCCCACGCCCGGAGAGACTGACCCATCCCGACTGGCTGTGCTCGACACTATTAAAGCCTACCTGACTGTTACTGACCAGAAGATGGTGAGCTCATTTTTGCAGAAAGCCACAGAGAAGCTCAGCAGTCCAGACTCTACAGAGTTTACACGACATAGTGTAATGGACTTGGTGGTGACAATGGCTGCGTTTGTGGATGGAGAAACTATGACACAAACATATGATTTAATCAAGCCCTACTTGGAGAGTAAGGATTCTGCTATTCAGAAGAAGGCATACCGGGTTCTAGAGGAGATGTGTGGAGGGGAGAGGGAAACGTGTAAGAAGTTTGTCCAGGGCAATCTTGAACAGCTCAAACAGGTTCTGCTGGACAACCTGAAGAGCGCCTCCTCGCCTGCCAAAAGACCCCGATTGAAGTGCCTTATTCACATTGTGAAACAACTGAATGAAGAACACAAAGACTTCCTCACTGCCCTGCTTCCTGAGGTGATTATTTGCACAAAGGAAGTGTCGATTGGAGCACGGAAAAATGCCTATTCCCTCCTTGTGGAAATTGGCAATGCCTTCATTCAGTTCAGTGGGAACTCCAAAGAAGCCATCAATGAGTATTTGGGACATGTATACATTGGACTCACTGGATCAGTCACAATGATTACCTGTACAGTACTGGCCCTCACCAGACTTGTTTATCAGTATAAAGACACACTTGATGTTTCACCACTGGAGCAGCTGCTGCACAATGTTTGCCTGCTGCTCTCCAGTAGAACAAGGGAGATTGTCAAAGCCTGTCTGGCCTTCATTAAAGTCATCCTCTTTATCCTGGATGTGAAGGTTCTGGCCAGCCATGTGTCAGTCATTATGGAGGGCATTACCAATATGAAAGAAGACATGAGACGACACTGCAGGATGAAGCTAAAGAGCATTTTCACTAAATTAGTCCGCAAATTTGGCTATGAGCTGGTGAAGAGCATGTTGCCGGCAGAACATCACAAGGTTCTTGCAAACATACGTAAAGTGGAGGCCAGAACAAAAAGGCGCAAGCTCCTGAACAAGGATGAAGAGGACGAGTCAGACAGTGAAGACAACGCCCCCAAAGCCAAGACTAACAGTATTGAGGACATTTTGGCAGAGACGGACTCTGATGACTCGGAGGATGAAGGTCCAAAGAAGGGCCAAAAGAAGCCAATTAAACAGAAGGCAAAGGCATGGCTAAAGGAAGGCGTGTCAGATGATCCACTCAACTTCCTGGACCCCAAGGCATCTCAGAGAGTGCTCGCCACAAACCCTGACCTGAAGAAAACAGCCAAAGTTGAACACGGGTTCAAGGTGACTTCAGATGGCCGACTGATCATCAAggaagatgatgaagatgacGGAGCTAAAGATGACGACCAAGACATTGAAGACATTCTAAAAGAAGCGGGAGTCAAAACAaaaaagacacagaaaaggAAAATTGAAGATGACATGGATGATGACGACATGGATGTTGAACCACAAATGAAATACAAAGCTGGTGGAATTGGGATCCATAGACCACTGGGTGGAAGACAAGAATCTGGATCTGAGTACAAATCAAAgAAAGGGAAAGGTGATATTAAGAAGAAGGGGAAATGTGACCCGTTTGCCTACATCCCTCTCCAGAAAGCACAGCTCAACCGCAGGAAAAAGGCCAAACTGCAGGGCCAGTTTAAGGGAATGGTCCGAGGAGCAAAAAAAGGAGCCCTTTtggggaagaaaatgggaaaaaagagGAAAGCTTAAGGCCTGTACACACGTGCAGATAGACATTTTTGTTGAATATTTTGGTGAAACAGCAGTTCTTCCCTGATCTCTTGATCCTGAAGTGAAGATAAAGTGAAGATAAATCTATCCTATAAAAATCTATCCTATAAAAAAAGATTACTGACTTCTGTTCTGCTAAGTATATTGCTTTTGGATGCTCCTTTTCTAGAGTCACACCTCCCAAACTAaagttaaagtgtttatttttgacattgAAAGGGTGAATTGCACAAGATGCTTGTGTCTGATAATTGTATTGATGTGTCACATGTATGAGatgctaaataaatatttccccaactta

Function

GO: NA

KEGG:

id description
K14794 RRP12; ribosomal RNA-processing protein 12

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU295330 lncRNA upstream 50752 19272937 ~ 19273154 (+) True G217696
XR_002651918.1 lncRNA upstream 92146 19219513 ~ 19231760 (+) True LOC111195980
TU295017 lncRNA upstream 384003 18939025 ~ 18939903 (+) True G217472
TU294978 lncRNA upstream 565718 18753917 ~ 18758188 (+) True G217439
TU295359 lncRNA downstream 17274 19362678 ~ 19365255 (+) True G217715
TU295434 lncRNA downstream 152660 19498064 ~ 19518320 (+) True G217768
TU295453 lncRNA downstream 238677 19584081 ~ 19584405 (+) True G217784
TU295456 lncRNA downstream 253574 19598978 ~ 19599243 (+) True G217787
TU295466 lncRNA downstream 265835 19611239 ~ 19620647 (+) True G217790
XM_022684798.1 mRNA upstream 7882 19280170 ~ 19316024 (+) True LOC103037070
XM_007249549.3 mRNA upstream 54480 19263976 ~ 19269426 (+) True LOC103036761
XM_022684792.1 mRNA upstream 106917 19167871 ~ 19216989 (+) True LOC103040131
XM_007249547.3 mRNA upstream 109585 19196661 ~ 19214321 (+) False LOC103040131
XM_007249548.3 mRNA upstream 109585 19199762 ~ 19214321 (+) False LOC103040131
XM_007240388.3 mRNA downstream 27169 19372573 ~ 19374811 (+) True mettl18
XM_007240386.3 mRNA downstream 38745 19384149 ~ 19387991 (+) True marveld1
XM_007240382.2 mRNA downstream 428912 19774316 ~ 19804731 (+) True LOC103037144
XM_007240378.3 mRNA downstream 662766 20008170 ~ 20019444 (+) True slc25a28
XM_007240374.3 mRNA downstream 745807 20091211 ~ 20101103 (+) True got1
XR_002651927.1 other upstream 120390 19167863 ~ 19203516 (+) False LOC103040131
TU295009 other upstream 476878 18837362 ~ 18847028 (+) False cxcl12
TU294985 other upstream 579675 18743233 ~ 18744231 (+) False LOC103030769
TU294912 other upstream 1007082 18311906 ~ 18316824 (+) False eif4ebp2
XR_002651919.1 other upstream 2148173 17167018 ~ 17175733 (+) False LOC111195981
TU295577 other downstream 675010 20020414 ~ 20074343 (+) True G217874
TU295704 other downstream 1066840 20412244 ~ 20415643 (+) False LOC103032529
XR_002651938.1 other downstream 2715562 22060966 ~ 22096652 (+) False mark3
XR_002651939.1 other downstream 2715563 22060967 ~ 22096652 (+) False mark3
TU296278 other downstream 2871895 22217299 ~ 22218860 (+) True G218351

Expression Profile