RNA id: TU295466


Basic Information

Item Value
RNA id TU295466
length 4040
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G217790
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 19611239 ~ 19620647 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctttacaactttgatgccaacatgattctgaggtagcccgtcaatctgtgtagacatacgcccccagggggcggagccaaagctaaaaatctgtttctcaggaaccgtacaagctatgaagctctcctttggcatgtatcatctatggcctatgtcctaatgttttacaaaaggaaaatttgatatgcaaatttttgcgatcgttattagccaatcagattccagcaagcttttgacaggctaaacaatgaccaatcaggacgatacttataccctacatgtatctcagggccttctatcatccattaaaatatggcgttgattggcctcaagggggcgctatagcagaaaatcagttatatctaaaggtacaagtggcctaggcttgttattcttttttagttgtatactttgctgtagcctttacaactttgatgccaacatgattctgaggtagcccgtcaatctgtgtagacatacgcccccagggggcggagccaaagctaaaaatctgtttctcaggaaccgtacaagctatgaagctctcctttggcatgtatcatctatggcctatgtcctaatgttttacaaaaggaaaatttgatatgcaaatttttgcgatcgttattagccaatcagattccagcaagcttttgacaggctaaacaatgaccaatcaggacgatacttataccctacatgtatctcagggccttctatcatccattaaaatatggcgttgattggcctcaagggggcgctatagcagaaaatcagttatatctaaaggtacaagtggcctaggcttgttattcttttttagttgtatactttgctgtagcctttacaactttgatgccaacatgattctgaggtagcccgtcaatctgtgtagacatacgcccccagggggcggagccaaagctaaaaatctgtttctcaggaaccgtacaagctatgaagctctcctttggcatgtatcatctatggcctatgtcctaatgttttacaaaaggaaaatttgatatgcaaatttttgcgatcgttattagccaatcagattccagcaagcttttgacaggctaaacaatgaccaatcaggacgatacttataccctacatgtatctcagggccttctatcatccattaaaatatggcgttgattggcctcaagggggcgctatagcagaaaatcagttatatctaaaggtacaagtggcctaggcttgttattcttttttagttgtatactttgctgtagcctttacaactttgatgccaacatgattctgaggtagcccgtcaatctgtgtagacatacgcccccagggggcggagccaaagctaaaaatctgtttctcaggaaccgtacaagctatgaagctctcctttggcatgtatcatctatggcctatgtcctaatgttttacaaaaggaaaatttgatatgcaaatttttgcgatcgttattagccaatcagattccagcaagcttttgacaggctaaacaatgaccaatcaggacgatacttataccctacatgtatctcagggccttctatcatccattaaaatatggcgttgattggcctcaagggggcgctatagcagaaaatcagttatatctaaaggtacaagtggcctaggcttgttattcttttttagttgtatactttgctgtagcctttacaactttgatgccaacatgattctgaggtagcccgtcaatctgtgtagacatacgcccccagggggcggagccaaagctaaaaatctgtttctcaggaaccgtacaagctatgaagctctcctttggcatgtatcatctatggcctatgtcctaatgttttacaaaaggaaaatttgatatgcaaatttttgcgatcgttattagccaatcagattccaggaacctttgaccctattgacacagaaattgacatacatatatagactgataatctgatcttgattgcaaattttcagccaaatcggacatgttttgcctctacaacggctggaaaactacagcgattttgtaggcctcaagcctgtattatcgcttttttcaaacctaaatggacagaagtcaggaacctttgatcctattgacacagaaattgacatacatatatagactgataatctgatcttgattgcaaattttcagccaaatcggacatgttttgcctctacaacggctggaaaactacagcgattttgtaggcctcaagcctgtattatcgcttttttcaaacctaaatggacagaagtcaggaacctttgaccctattgacacagaaattgacatacatatatagactgataatctgatcttgattgcaaattttcagccaaatcggacatgttttgcctctacaacggctggaaaactacagcgattttgtaggcctcaagcctgtattatcgcttttttcaaacctaaatggacagaagtcaggaacctttgaccctattgacacagaaattgacatacatatatagactgataatctgatcttgattgcaaattttcagccaaatcggacatgttttgcctctacaacggctggaaaactacagcgattttgtaggcctcaagcctgtattatcgcttttttcaaacctaaatggacagaagtcaggaacctttgaccctattgacacagaaattgacatacatatatagactgataatctgatcttgattgcaaattttcagccaaatcggacatgttttgcctctacaacggctggaaaactacagcgattttgtaggcctcaagcctgtattatcgcttttttcaaacctaaatggacagaagtcaggaacctttgaccctattgacacagaaattgacatacatatatagactgataatctgatcttgattgcaaattttcagccaaatcggacatgttttgcctctacaacggctggaaaactacagcgattttgtaggcctcaagcctgtattatcgcttttttcaaacctaaatggacagaagtcaggaacctttgaccctattgacacagaaattgacatacatatatagactgataatctgatcttgattgcaaattttcagccaaatcggacatgttttgcctctacaacggctggaaaactacagcgattttgtaggcctcaagcctgtattatcgcttttttcaaacctaaatggacagaagtcaggaacctttgaccctattgacacagaaattgtcatccagattagtcatgctggtaatctagcttggtcttcacggtcatgctggtcagccgcctgggtcattcttgtttatgctccacccacttaattttttttaaaatttgcataatatgcaaaacctacttttgagatcttgtccttggatccttgaccaatcatgacatgtttggtgtcaaacagttcagcagagcttactcctcaataattattaaaaaaatctttacatttataaacaatatggccgccatatgcaaatgagttctaccatggtgcagtaaaatgtctttaacacttataacttttgaatgcttaacctgacactaataccacttcagtcctttgatcattacatgattctcagataccctgtcagtttaagtagacatacacccccagggggcggggccaatgctcgatagctgtttctctagaaccatacaagctatcaaggtcatcctagccaattatcatctatggcccatgcactaatggtacaccaaatgaaaatttgatatggacacttttgtggtcactattagccaatcacattccagcaagcttttaacAGGCGGAATGTTAATCAGGTCAaaacttatatactatatacgggTTATTTATATGCCCTTTTTATGCCTtgtgttttttcaatttaagaacTGAATTTGTTTCACCAAATGCCCACTAGAGTGCAGTAAGACACCACATAAAACCTGATGAACACTACAGCTCAATTTATCAATGCTTTTCAACTAGTTTACTCACACCACTCATCTAGCATTGCcattatggtctttatggtcacgctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU295456 lncRNA upstream 11996 19598978 ~ 19599243 (+) True G217787
TU295453 lncRNA upstream 26834 19584081 ~ 19584405 (+) True G217784
TU295434 lncRNA upstream 92919 19498064 ~ 19518320 (+) True G217768
TU295359 lncRNA upstream 245984 19362678 ~ 19365255 (+) True G217715
TU295330 lncRNA upstream 338085 19272937 ~ 19273154 (+) True G217696
TU295487 lncRNA downstream 36197 19656844 ~ 19657051 (+) True G217800
TU295498 lncRNA downstream 128219 19748866 ~ 19755067 (+) True G217809
TU295502 lncRNA downstream 184163 19804810 ~ 19807083 (+) True LOC111195994
XR_002651931.1 lncRNA downstream 184876 19805523 ~ 19807038 (+) False LOC111195994
TU295561 lncRNA downstream 384405 20005052 ~ 20005447 (+) True G217861
XM_007240386.3 mRNA upstream 223248 19384149 ~ 19387991 (+) True marveld1
XM_007240388.3 mRNA upstream 236428 19372573 ~ 19374811 (+) True mettl18
XM_022684799.1 mRNA upstream 265835 19323906 ~ 19345404 (+) True rrp12
XM_022684798.1 mRNA upstream 295215 19280170 ~ 19316024 (+) True LOC103037070
XM_007249549.3 mRNA upstream 341813 19263976 ~ 19269426 (+) True LOC103036761
XM_007240382.2 mRNA downstream 153669 19774316 ~ 19804731 (+) True LOC103037144
XM_007240378.3 mRNA downstream 387523 20008170 ~ 20019444 (+) True slc25a28
XM_007240374.3 mRNA downstream 470564 20091211 ~ 20101103 (+) True got1
XM_007240373.3 mRNA downstream 525195 20145842 ~ 20222597 (+) True hpse2
XM_022684809.1 mRNA downstream 616413 20237060 ~ 20251768 (+) False hps1
TU295347 other upstream 265838 19342994 ~ 19345401 (+) False rrp12
XR_002651927.1 other upstream 407723 19167863 ~ 19203516 (+) False LOC103040131
TU295009 other upstream 764211 18837362 ~ 18847028 (+) False cxcl12
TU294985 other upstream 867008 18743233 ~ 18744231 (+) False LOC103030769
TU294912 other upstream 1294415 18311906 ~ 18316824 (+) False eif4ebp2
TU295577 other downstream 399767 20020414 ~ 20074343 (+) True G217874
TU295704 other downstream 791597 20412244 ~ 20415643 (+) False LOC103032529
XR_002651938.1 other downstream 2440319 22060966 ~ 22096652 (+) False mark3
XR_002651939.1 other downstream 2440320 22060967 ~ 22096652 (+) False mark3
TU296278 other downstream 2596652 22217299 ~ 22218860 (+) True G218351

Expression Profile