RNA id: TU295704


Basic Information

Item Value
RNA id TU295704
length 1477
RNA type TUCP
GC content 0.44
exon number 5
gene id LOC103032529
representative False

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 20335947 ~ 20415643 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GACTTTGGCTTTGCTAAGAAGATCGGATTTGGGAAGAAGACGTGGACATTCTGTGGCACGCCAGAGTACGTAGCCCCAGAAATCATTCTTAACAAAGGTCATGATATCTCAGCAGACTACTGGTCCCTGGGCATCCTCATGTATGAGCTGCTGACTGGCAGCCCTCCATTTTCAGGCCCTGACCCTATGAAGACTTACAACATCATCCTAAGAGGCATTGACATGATCGAATTTCCAAAGAAAATCACCAAAAATGCTGCCAATCTCATTAAAAAGCTATGCAGGGATACTCCTTCTGAAAGACTAGGAAACTTGAAAAACGGAGTCAAAGACATTCAAAAGCACAAATGGTTTGAAGGCTTTAACTGGGAGGGCTTACGGAAGGGAACACTCACACCTCCATCATCCCCAGTGTAACATCAGCCACAGACACAAGTAACTTTGACAGCTTTCCTGAGGACAATGAAGACCCTCCTCCTGACGACAACTCAGGCTGGGACGGGGACTTCTGAAGCTACTCCACACACTGGCTCACTTTTCACACACCAAACAAAAGACCTGCTCCACTGTTGCCTGGAACAGAGCTGCTTCTTTTGGACAGGCTGCATTAAGGACTGAAGAAGAGAAAGTGAAGAGACTATGGGAGTAAAAGAAGAAAATTTGTTTTGGTTAGCCTTGACTGTTGCAATAGAGAAATTAAATTCCTATGGACTTAAAGCTGCAAGGGAATCAGAGCTTCAGGCTCTCTACTACACGAGTCCCAACAACGGGGGCATATCATTCAcattgtgtgtgcgtgtgtatgggtgggtgcgtgcgtgcgtgtttACCAGGGTGTAAACACCCTGGTGTTTGCTCTTGTGTACTTGCCTCAAGCTCCTCTTATCATACTATAATGGAGATATGTTGCAGCAGGTTGTGACCTCACTCTTTATCATTTTGTCCTCGATTGGCTGCAAACTCTGTGCCGTCCCAGCGTTGTGCAGAGGGCTGTGTAAAGTATGCTGTAGAGATTTGGATTTATACACTGCATCATGAAGCTAGAATTCAGGGTTCCCAGACAGACCTGAATGTTATTCCTGATAGCTGATGAGGCATTATAGAACATGTACATAGTAATATATTACCCAAACAAATATGAGCAGCATTCGCTGATTATCCTAAAAAAGCACAAAGTTCTGTTGCATTTAGAATAATGGATTGGTACTAGGTTTCAGAAGTGCCCTGTGCAGACACTGCATAACCACTGCTCTTCCTCTTTCCTCCTTGTATGTGATGTGATGATGGCGGATGGATATGACGGCTGGTGATACAGCCAGCCAAGGGCTTGTGCAAATGTTGGATTTATCAGAATCTCCCAATGTGCCTCAGATTCTTGACACCgttcatatatcatatatcagccCCAAGGCCCCTGCTCAATTCAAAACACTCAAccattttaatgctaaaattTCTTCCATATTCTCACTAAAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU295606 lncRNA upstream 209818 20196804 ~ 20202426 (+) True G217902
TU295590 lncRNA upstream 329427 20082601 ~ 20082817 (+) True G217887
TU295578 lncRNA upstream 336331 20074861 ~ 20075913 (+) True G217875
TU295569 lncRNA upstream 405036 20006953 ~ 20007208 (+) True G217868
TU295561 lncRNA upstream 406797 20005052 ~ 20005447 (+) True G217861
TU295721 lncRNA downstream 27366 20443009 ~ 20443278 (+) True G217978
TU295772 lncRNA downstream 713794 21129437 ~ 21134440 (+) False G218022
TU295771 lncRNA downstream 718080 21133723 ~ 21134440 (+) True G218022
TU295780 lncRNA downstream 738107 21153750 ~ 21154056 (+) True G218025
TU295783 lncRNA downstream 766601 21182244 ~ 21188902 (+) True G218028
XM_007240369.3 mRNA upstream 116293 20292151 ~ 20295951 (+) True LOC103033039
XM_022684810.1 mRNA upstream 145464 20261876 ~ 20266780 (+) True ankrd2
XM_022684809.1 mRNA upstream 160476 20237060 ~ 20251768 (+) False hps1
XM_007240371.2 mRNA upstream 160476 20237942 ~ 20251768 (+) True hps1
XM_007240373.3 mRNA upstream 189647 20145842 ~ 20222597 (+) True hpse2
XM_022685033.1 mRNA downstream 5296 20420939 ~ 20424471 (+) True LOC111196038
XM_007240363.3 mRNA downstream 792048 21207691 ~ 21227673 (+) True dhx57
XM_007240361.3 mRNA downstream 823401 21239044 ~ 21247589 (+) True atl2
XM_007240397.3 mRNA downstream 833013 21248656 ~ 21252177 (+) True LOC103041535
XM_007240360.3 mRNA downstream 866373 21282016 ~ 21320875 (+) True LOC103030100
TU295577 other upstream 337901 20020414 ~ 20074343 (+) True G217874
TU295347 other upstream 1066843 19342994 ~ 19345401 (+) False rrp12
XR_002651927.1 other upstream 1208728 19167863 ~ 19203516 (+) False LOC103040131
TU295009 other upstream 1565216 18837362 ~ 18847028 (+) False cxcl12
TU294985 other upstream 1668013 18743233 ~ 18744231 (+) False LOC103030769
XR_002651938.1 other downstream 1645323 22060966 ~ 22096652 (+) False mark3
XR_002651939.1 other downstream 1645324 22060967 ~ 22096652 (+) False mark3
TU296278 other downstream 1801656 22217299 ~ 22218860 (+) True G218351
TU296281 other downstream 1802474 22218117 ~ 22218860 (+) False G218351
TU296687 other downstream 3280934 23696577 ~ 23708243 (+) True G218651

Expression Profile