RNA id: TU296215


Basic Information

Item Value
RNA id TU296215
length 2692
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G218314
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 22013475 ~ 22017817 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tcagacctcttccttcctcttcaaAGAAAACCTGGTGGTAGAGTTTTTTTATTCCCATTTGAGTTCATAGcagaagtttattttaaaaacgtaatatattaatagtagtcaaaataaattatcagacacACTTACACTACTTAAAAGTTAAAGCACAGacaattatttaattgttagttttttttttttttttaggcgaCATGTTATTGGTTACAAACTTACAGTTGATTTGCTGCTTATTTACAAAGCACTGTTGCAATGCTGCATGCTCTACCACAGTTTTTACCTTATACTGCATTGCACTGCACTGTTTGGATTGTTGTCATCAActcaaataaaatcaattttatttatatcgcGCTTTTTACAAATAATGTTGTTTCAGAGCAGCTTCACATAAATCAGGTAGCAGGACAAACACAACAcataaaatctgacaaaaaaagaTACTTAACAATACAAAACAGATTGATATAACTCCTAAAAGTGTGGATTTCACCTGGATAGTGTGGATTATAGCAATAATAAATAGAGTGAATGTCACGAGTTCAGTTTCCCACAACATCAAAAGGTTCATCAAAAGGTTCATTCGCCAGGAAGAAGTCTGACAGACTCAAAGCCACAACAGCATCAGAAGACGAGATTCTGAGAATCAACAGTCTTTGTGACTGGTAGCTCACATGACAACACATCGACTGCTTAACACCGGACCAAGTTTTAACTGTGAATGGAAGCTGCAGCTGAGACTATGTGGCAGTAGGAAAAAACACTGCTAAAATGCTTGCTACTAAAAAGATTGGGGGTGTTTTAAAAATCTCAAGCATAGTGTATATCATACACTGATATTGAGCAACTCTTTGATTTGTTTTCATTGgagaacaacagaaaaaaatactatgtcaacaaaacaatacaacacaatccTATATCAAGTGATGAAGTGGGCTGAGAAGTGAGGAAGTTCATTTGACGTTCATAGCCAACACAATTGCCACATTAAATACCACTTGTGGGACTATGTTAAGAAATGTGCAGAAAAGGTCAATATAACCACCGTAGGAGGAACATGTGGAAGTTGGCTTGTATTGATTTAAACCACATACCAAAAAGTTGGGTGTACTCACACGGTTTGGTTAAATCGTACTGGAGCACAGTTCTCCCCGATTCCCCACTCCGTCGCTTAttgataaaagcagagataatCCACTTTAATTtgcttaagccctatccggatgggattagtttctcagggggacgtctgtaaaaaatatttcacacttctactcagtgataaaactcttgcatctggactgcaattgaaaaaacagaagtGTTGTCACATGAGGAATTGGTTCAGTaactcctccatttccactaactgttgtgtttacatggatctccgtggaaatgcgCTCCCACAGTGTatttacggtgcgtggcagtgaacaaatagctattttattaaatgtaaggtgacgaaactcagagatctgcgttaaaattaataaaattaataaaattaccGAACGACCActgagttcagcgaaaaacagtaggtagttctgcctgtaattttctcagagaacatctaagaaaaacacatacatggtcgttccccaataacagagaaaattacccaggaCCCCCAGGAAATTAATCCTTTCCGGATGGGGCTTTAGAAATATGCACTAATAGCCACAGTTGTCTCAGTCACGGTTACatacataccaAGTGGAGGggcttttcctggtgggggtgctgaattcggcacaacaccaccaTGCTTGTTTACAGGAACTTCCAAGTACTCCCCAGTGTAGCTGTTGTGTGGGCTTTTTTCCCTTTTGCAATCTGCAAACTATTCATTATTTGTCTATCTTGCAAAGGAGTTTAAAACAGTACAGTGAACTGCATTAATTACTTATTTGTAACTGATTGGCTTGCTATATCTTGTGAAGTGACACAGGGTTCTATGGTAGGGCCTGTGACACTGATAGAACTACACAGAAGCAAAATTGTGAGAGTACAGAACTTGTGTGGGCTTGCATACAAAATCTAATGGATTAAGCACTAAGAACaaattagtatatatttttatgaaaccttttataaatttctattatgaatatttttgtGGATAGAGCAAATACCATCTGGCGTACACTCATGGGATGCTTTCCAAACCACCAGTGGAACACATACCATAGTTTGGAAACTCCCATAGAATACACTTTGCAGTCCCCAGACATCTTAACAAAAGTTCATGTCTCGTACAATCAGGTGTAACTCAATAGAGATTTATCATTGTTTTTCATGCAATTTGATTCTAATAAGCCTTAAGATATAGATGTTTGTgaggtttaaggggttaaaacatGAGATCtctattttaaaagtacttGATCAGCATATGTCTAGTCTACAACCCCTCAGTAAGAGCACACAGTGCAAAATTCACAGTTTCTCGACTAACTGTCTGGGAGTAGCATGGAGAAGCAGGAGAAAGGCAAGTTGGCCAGACAGTCCGTGTTCACTGCTGGCTGAATCTCAGTAAAGAGGGCATGCTCTGTCTTCCCAGATATTTTGTGGAGTCGTTTCAGCTCAGAGAGCTTCTGCAGAATCACTTGTCTCTCCCTGCCTCGGCTCATTCCACGAAAATACAGCACAGCTGAGAGATGTTTTTTACTGTGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU296207 lncRNA downstream 18262 21994819 ~ 21995213 (-) True G218307
TU296163 lncRNA downstream 61682 21951443 ~ 21951793 (-) True G218273
TU296154 lncRNA downstream 84685 21927468 ~ 21928790 (-) True G218266
TU296148 lncRNA downstream 126878 21886210 ~ 21886597 (-) True G218261
TU296125 lncRNA downstream 162217 21850360 ~ 21851258 (-) True G218241
TU296231 lncRNA upstream 20642 22038459 ~ 22038764 (-) False LOC103022835
TU296233 lncRNA upstream 34072 22051889 ~ 22053747 (-) False G218329
TU296320 lncRNA upstream 43228 22061045 ~ 22061924 (-) True G218369
TU296321 lncRNA upstream 66358 22084175 ~ 22089666 (-) False G218370
TU296322 lncRNA upstream 66358 22084175 ~ 22091958 (-) True G218370
XM_022684448.1 mRNA downstream 23446 21968779 ~ 21990029 (-) True LOC103023885
XM_022684447.1 mRNA downstream 51822 21951877 ~ 21961653 (-) True LOC103024928
XM_007240348.3 mRNA downstream 209732 21771507 ~ 21803743 (-) False ninl
XM_022684450.1 mRNA upstream 20606 22038423 ~ 22045112 (-) True LOC103022835
XM_007240330.3 mRNA upstream 81764 22099581 ~ 22106482 (-) True LOC103021922
XM_007240326.3 mRNA upstream 125660 22143477 ~ 22161588 (-) True bag5
XM_007240325.3 mRNA upstream 125660 22143477 ~ 22159403 (-) False bag5
XM_007240327.3 mRNA upstream 125660 22143477 ~ 22155217 (-) False bag5
TU296124 other downstream 158334 21851372 ~ 21855141 (-) True G218240
TU296033 other downstream 256076 21755426 ~ 21757399 (-) False LOC111195999
TU295823 other downstream 806673 21160374 ~ 21206802 (-) False LOC103031576
TU295824 other downstream 806673 21160374 ~ 21206802 (-) False LOC103031576
trnar-ccg_27 other downstream 946330 21067073 ~ 21067145 (-) True trnar-ccg_27
TU296239 other upstream 34870 22052687 ~ 22056493 (-) True G218329
TU296561 other upstream 827016 22844833 ~ 22846205 (-) True G218545
TU296808 other upstream 1833146 23850963 ~ 23857507 (-) True G218720
TU296881 other upstream 2037708 24055525 ~ 24056877 (-) True G218781
TU297852 other upstream 4454811 26472628 ~ 26474247 (-) True G219510

Expression Profile