RNA id: TU296281


Basic Information

Item Value
RNA id TU296281
length 412
RNA type TUCP
GC content 0.50
exon number 2
gene id G218351
representative False

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 22217299 ~ 22218860 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gagatgcccaaaaggacacttggagatgtccaaagggacaaattgagatgcccaaaaggacacttggagatgcccaaaaggacacttggacacgcccaaaaggacatttggagatgcacaaagggacacttggacaCGCCCAAAAGGACACGTGGACACGCCCAAAAGGACTCTTGGACacgcccaaaaggacacttggagatgtccaaagggacaaattgagatgcccaaaaggacacttggagatgcccaaaaggacacttggagacgcccaaaaggacacttggagatgcccaaagggacacttggagatgcccaaaaggacacttgaagatgtcccaaagggacacttgaagatttcccaaagggacacttggagatgcccaaaaagacactgggagatgcccaaaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU296282 lncRNA upstream 523 22217299 ~ 22217594 (+) False G218351
TU296254 lncRNA upstream 74941 22137863 ~ 22143176 (+) True G218335
TU296249 lncRNA upstream 111580 22105412 ~ 22106537 (+) False G218331
TU296248 lncRNA upstream 115636 22099516 ~ 22102481 (+) True G218331
TU296246 lncRNA upstream 117800 22099516 ~ 22100317 (+) False G218331
TU296275 lncRNA downstream 4714 22223574 ~ 22268752 (+) True G218348
TU296314 lncRNA downstream 53030 22271890 ~ 22285011 (+) True G218364
TU296408 lncRNA downstream 177232 22396092 ~ 22399515 (+) True G218421
TU296409 lncRNA downstream 177232 22396092 ~ 22399515 (+) False G218421
TU296424 lncRNA downstream 207267 22426127 ~ 22426436 (+) True G218434
XM_007240319.3 mRNA upstream 13903 22169484 ~ 22204214 (+) False klc1
XM_007240315.3 mRNA downstream 21833 22240693 ~ 22244448 (+) True fignl1
XM_007240303.3 mRNA downstream 186945 22405805 ~ 22419342 (+) True mocos
XM_007240295.3 mRNA downstream 210782 22429642 ~ 22451937 (+) True anxa11
XM_022684845.1 mRNA downstream 210782 22429642 ~ 22451937 (+) False anxa11
XM_015603366.2 mRNA downstream 216529 22435389 ~ 22451937 (+) False anxa11
XR_002651938.1 other upstream 121465 22060966 ~ 22096652 (+) False mark3
XR_002651939.1 other upstream 121465 22060967 ~ 22096652 (+) False mark3
TU295704 other upstream 1802474 20412244 ~ 20415643 (+) False LOC103032529
TU295577 other upstream 2143774 20020414 ~ 20074343 (+) True G217874
TU295347 other upstream 2872716 19342994 ~ 19345401 (+) False rrp12
TU296687 other downstream 1477717 23696577 ~ 23708243 (+) True G218651
TU296854 other downstream 1840351 24059211 ~ 24063788 (+) True G218758
TU297241 other downstream 2623442 24842302 ~ 24842533 (+) True G219050
TU297354 other downstream 2943082 25161942 ~ 25172243 (+) False dapp1
TU297390 other downstream 3038090 25256950 ~ 25302587 (+) True G219171

Expression Profile