RNA id: TU296282


Basic Information

Item Value
RNA id TU296282
length 208
lncRNA type inter_gene
GC content 0.51
exon number 2
gene id G218351
representative False

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 22217299 ~ 22218860 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gagatgcccaaaaggacacttggagatgcccaaaaggacacttggagacgcccaaaaggacacttggaaatgcccaaagtgacacttggagatgcccaaaaggacacttggagacgcccaaagggacacttggagatgcccaaaaagacacttggagatgcccaaaaggacacttggagatgcccaaaaggacacttggagacgccCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU296254 lncRNA upstream 74123 22137863 ~ 22143176 (+) True G218335
TU296249 lncRNA upstream 110762 22105412 ~ 22106537 (+) False G218331
TU296248 lncRNA upstream 114818 22099516 ~ 22102481 (+) True G218331
TU296246 lncRNA upstream 116982 22099516 ~ 22100317 (+) False G218331
TU296192 lncRNA upstream 199482 22012145 ~ 22017817 (+) True G218298
TU296275 lncRNA downstream 5980 22223574 ~ 22268752 (+) True G218348
TU296314 lncRNA downstream 54296 22271890 ~ 22285011 (+) True G218364
TU296408 lncRNA downstream 178498 22396092 ~ 22399515 (+) True G218421
TU296409 lncRNA downstream 178498 22396092 ~ 22399515 (+) False G218421
TU296424 lncRNA downstream 208533 22426127 ~ 22426436 (+) True G218434
XM_007240319.3 mRNA upstream 13085 22169484 ~ 22204214 (+) False klc1
XM_007240318.3 mRNA upstream 13085 22169485 ~ 22204214 (+) True klc1
XM_022684838.1 mRNA upstream 13085 22169486 ~ 22204214 (+) False klc1
XM_015603356.2 mRNA upstream 13085 22169487 ~ 22204214 (+) False klc1
XM_007240320.3 mRNA upstream 13085 22169491 ~ 22204214 (+) False klc1
XM_007240315.3 mRNA downstream 23099 22240693 ~ 22244448 (+) True fignl1
XM_007240303.3 mRNA downstream 188211 22405805 ~ 22419342 (+) True mocos
XM_007240295.3 mRNA downstream 212048 22429642 ~ 22451937 (+) True anxa11
XM_022684845.1 mRNA downstream 212048 22429642 ~ 22451937 (+) False anxa11
XM_015603366.2 mRNA downstream 217795 22435389 ~ 22451937 (+) False anxa11
XR_002651938.1 other upstream 120647 22060966 ~ 22096652 (+) False mark3
XR_002651939.1 other upstream 120647 22060967 ~ 22096652 (+) False mark3
TU295704 other upstream 1801656 20412244 ~ 20415643 (+) False LOC103032529
TU295577 other upstream 2142956 20020414 ~ 20074343 (+) True G217874
TU295347 other upstream 2871898 19342994 ~ 19345401 (+) False rrp12
TU296281 other downstream 523 22218117 ~ 22218860 (+) False G218351
TU296687 other downstream 1478983 23696577 ~ 23708243 (+) True G218651
TU296854 other downstream 1841617 24059211 ~ 24063788 (+) True G218758
TU297241 other downstream 2624708 24842302 ~ 24842533 (+) True G219050
TU297354 other downstream 2944348 25161942 ~ 25172243 (+) False dapp1

Expression Profile