RNA id: TU296314


Basic Information

Item Value
RNA id TU296314
length 638
lncRNA type inter_gene
GC content 0.46
exon number 3
gene id G218364
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 22271890 ~ 22285011 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTTTGCCAGACagctctgtgtatgtgtgtgtgagtgtttgtgtgtgtgtgtgtatgtgtgtctgtttgaGTGTGTGGATAAGAAAGTTTTGCGGTGTGGTAACAGATATCTTCGTTGACAGTCAGTAGGTGCAGTACAGTTAACCTGGTGATGGTGAAAAGACGCCTTCAGACACTATTTGcagatgtgagtgtgtgtatgtgtgtgtgtgtcagagagagagggaaagagaaaaaaccAAGAGACTGTGTATAGAGAGGAAAGAGAGTAGTAGTGCtaaacatgaaaacaaaaaaaagctcaagAGGAGAAGGGTGGGACTACGCACTGCGAAACCGTTAAACAGACAAAATGACATGGCTCAGCTCAAAGGCATATCGAGACGAAAGTAAGCTCAGGCATGCTAGCTGAGTTAAATCCTGGGGTGCTTTTTCAGCAGACACAAAGGTTACAGGGGGGAACAGGAAACCAGCACGTTCCTATTTCCTGTCAACAGCCTTGAGAGATGTTAGGAGGGAAGTGCAGGAGTTTTCGGGAGGAGAAAAGGATTGCATGGGGAGACGGTGGTGACCATTCTGGACAAAGGGGCTTTGCGACCGTACACTGAGGGGGGCAAACTGCTCctgcaaaaaaacata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU296275 lncRNA upstream 3138 22223574 ~ 22268752 (+) True G218348
TU296282 lncRNA upstream 54296 22217299 ~ 22217594 (+) False G218351
TU296254 lncRNA upstream 128714 22137863 ~ 22143176 (+) True G218335
TU296249 lncRNA upstream 165353 22105412 ~ 22106537 (+) False G218331
TU296248 lncRNA upstream 169409 22099516 ~ 22102481 (+) True G218331
TU296408 lncRNA downstream 111081 22396092 ~ 22399515 (+) True G218421
TU296409 lncRNA downstream 111081 22396092 ~ 22399515 (+) False G218421
TU296424 lncRNA downstream 141116 22426127 ~ 22426436 (+) True G218434
TU296449 lncRNA downstream 167944 22452955 ~ 22453182 (+) True G218450
TU296450 lncRNA downstream 171822 22456833 ~ 22457223 (+) True G218451
XM_007240315.3 mRNA upstream 27442 22240693 ~ 22244448 (+) True fignl1
XM_007240319.3 mRNA upstream 67676 22169484 ~ 22204214 (+) False klc1
XM_007240303.3 mRNA downstream 120794 22405805 ~ 22419342 (+) True mocos
XM_007240295.3 mRNA downstream 144631 22429642 ~ 22451937 (+) True anxa11
XM_022684845.1 mRNA downstream 144631 22429642 ~ 22451937 (+) False anxa11
XM_015603366.2 mRNA downstream 150378 22435389 ~ 22451937 (+) False anxa11
XM_022684849.1 mRNA downstream 181467 22466478 ~ 22550270 (+) False dlg5
TU296278 other upstream 53030 22217299 ~ 22218860 (+) True G218351
TU296281 other upstream 53030 22218117 ~ 22218860 (+) False G218351
XR_002651938.1 other upstream 175238 22060966 ~ 22096652 (+) False mark3
XR_002651939.1 other upstream 175238 22060967 ~ 22096652 (+) False mark3
TU295704 other upstream 1856247 20412244 ~ 20415643 (+) False LOC103032529
TU296687 other downstream 1411566 23696577 ~ 23708243 (+) True G218651
TU296854 other downstream 1774200 24059211 ~ 24063788 (+) True G218758
TU297241 other downstream 2557291 24842302 ~ 24842533 (+) True G219050
TU297354 other downstream 2876931 25161942 ~ 25172243 (+) False dapp1
TU297390 other downstream 2971939 25256950 ~ 25302587 (+) True G219171

Expression Profile