RNA id: XM_007240298.3


Basic Information

Item Value
RNA id XM_007240298.3
length 8847
RNA type mRNA
GC content 0.44
exon number 32
gene id kcnma1
representative False

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 22563798 ~ 22818114 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

agggaaaagagagagagactgactgtgacttaggagagagagagagagagcgcgaggacatagacagacagacacgcgCACCAGATCAGCTGTCACCGCGCGAGCGCCAACCGTTAGCTACTGCTGGACCAGCGCTGTTGGCGTTTACCTCTCGCACCAGCCGCCCCGCAAACGAGCAGCGACGCTGAAGACCCCCTCTGCCAGCCCGAAGACCACCGCTACCGCGCCGAGGGGCGGTAAATAGCGAGCTAAGTTGGcgctgaggagagagagagagaggtgtttTAGAGAGAGGGGACGGGGGACGGGGAGCCCGGAGACCGTATCGACCGAGCTCAGAGACGCGTGCGGAGATGCGTAGCTGTGTGGGGGCTTAGCGCTTAGCTCCCGTCGTTTGgaagtttttttaaattctttttttcgCACAAAAACATAGAAATTGTCGTCAAAATGAAACCGTAAGGCGCTGCTGGTGCTGTGGGGGATTTAGCTAAATGTCTCTCGCGGAGGCGCGCAGCCTCGCTCCTTCTCTAGCGGTCGCCAGCAGTTTTggctaaaaacaaaacagcagcagTAGCGAGCTCGACCTACGCGCGCGTCGTCGGGGCTGGGGAGGAGGAATTCGGCTAGAGAGCGAGCGCcggaggagaagaaagagaaagagtaggAGGAGGAAAATAAGGGAAGAAGGGCTAGTTGAAGCAATATGGCTGATGGCCGGGGTTGGGGGCGCTGGCAGCAGCTCTCCAGAGCTTCTTCATGCTAGCTGTGGCAGATGGCAACGTTTCCTATGGCAGCAGCGGCGGCTCTAGAATGAGTAATAATATCAACTACAATAAAAACCCGGACTCCTCTGTCTCTATCTCCAAGATGGACGTGATCATCCCGTTCTCATCAGACGTACCGTGTGACAACAATGGTCAGCGCATGTGGTGGGCTTTCCTCGCCTCCTCCATGGTGACGTTTTTCGGGGGTCTCTTCATCATCCTCTTGTGGAGGACCCTCAAGTACCTGTGGACCGTCTGCTGCCACTGTAACATCAAAAACAAGCAGGAGGCACAGAAGGTGATTAACGCTCAGACGGACGGGCCAGTGAAAAACCAGGATGAGAAGGACGAGGCTCCAGCCAGTGAGGTGGGCTGGATGACCTCAGTAAAAGACTGGGCCGGGGTAATGATCTCAGCGCAGACTCTGACAGGCAGAGTACTGGTGGTGTTAGTCTTTGCGCTCAGTATTGGAGCTCTTGGAATATACTTCATAGACTCGTCTGACCCTATAGAATCCTGTCAGAATTTCTACAAAGACTTCACGTTACAAATCGACATGGCATTCAACGTGTTCTTCTTACTCTACTTTGGGCTGCGTTTCATTGCAGCCAACGATAAGCTGTGGTTCTGGCTGGAGGTGAACTCCGTGGTGGACTTCTTCACTGTGCCGCCAGTGTTTGTATCAGTGTATCTGAACAGGAGCTGGCTGGGTCTGAGATTTCTAAGAGCCTTGAGATTGATACAGTTCTCagaaatattacagtttttgaATATCTTAAAAACAAGTAATTCCATCAAGCTGGTGAACCTGTGTTCCATCTTCATAAGCACATGGCTCACAGCTGCAGGATTCATTCATCTGGTGGAAAACTCAGGGGATCCTTGGGAAAACTTCCAAAATTCTCAACCACTTTCATATTGGGAATGTGTGTACTTACTCATGGTCACTATGTCCACGGTGGGCTACGGAGACGTCTGTGCGAAAACCACCCTCGGCCGCCTTTTCATGGTCTTCTTCATTCTCGGCGGTCTGGCCATGTTTGCCAGCTACGTCCCTGAAATCATAGAGTTAATAGGAAACCGCAAGAAATATGGTGGTTCCTATAGTGCGGTTAATGGCAGAAAGCATATTGTGGTCTGTGGTCATATCACACTCGAAAGTGTATCCAACTTCCTTAAAGACTTCCTACACAAGGACAGGGATGATGTCAATGTAGAAATTGTTTTTCTCCATAATATTTCCCCTAATCTTGAGCTGGAAGCCTTGTTCAAACGTCACTTCACTCAGGTGGAATTCTACCAAGGATCTGTTCTCAACCCACATGATCTGGCTAGGGTCAAGATTGAGTCAGCAGACGCGTGCTTGATTCTTGCAAACAAATACTGTGCCGACCCTGATGCTGAAGATGCCTCCAATATTATGAGagtCATATCCATCAAGAACTACCATCCAAAGATAAGAATAATCACTCAAATGTTGCAGTACCACAACAAGGCCCATCTGCTAAACATTCCCAGCTGGAACTGGAAGGAGGGTGATGATGCGATCTGCCTGGCTGAGCTGAAGGCAGGCTTCATTGCCCAGAGCTGCCTGGCACAGGGCCTGTCCACCATGCTGGCCAACCTCTTCTCCATGAGGTCATTCATCAAGATTGAAGAAGACACATGGCAGAAGTATTACCTGGAGGGCGTGGCCAATGAAATGTACACCGAGTACTTGTCCAGTGCCTTTGTGGGGCTTTCATTTCCTACAGTTTGCGAGCTGTGCTATGTGAAGCTCAAATTGTTATTGATTGCTATTGAATACAAGTCTGAGCAGAGAGAAAGCAGAAGCAGAAAGCGTATTTTGATCAACCCTGGGAACCATGTTAAGATGCAGGAGGGAACCTTGGGATTCTTTATTGCCAGTGACGCCAAAGAGGTCAAAAGagCATTTTTCTACTGCAAAGCTTGTCACGATGACATCACAGATCCCAAAAGGATCAAAAAGTGTGGCTGCAAGAGATTGATACATTCCAAGATGTCCGTCTACAAGCGAATGAAACTGGCATGTTGTTTTGATTGCGGGCGCTCTGAGCGCGACTGCTCGTGCATGTCAGGCAGTGTACATAGTAACATGGACAGCCTTCAGAGGGCCTTCCCACTTTCTTCTGTCTCTGTTCATGATTGCTCAACCAGTTTACGTGCCTTCGAAGATGAGCATCCATCAACGCTGTCACCCAAAAAGAAGCAGCGCAACGGAGGCATGCGAAATTCACCCAACTGCTCGCCCAAAATGATGAGACATGACCCTCTCCTCATTCCGGGAAACGAGCAGATTGAGAATATGGATGTTAATGTGAAGAGATATGACTCCACAGGAATGTTTCACTGGTGTCCATCCAAAGAAATAGAGAAGGTCATTCTGacACGGAGTGAGGCCTCCATGACGGTTCTGAGTGGACACGTGGTGGTCTGTATATTTGGGGATGTCACGTCCGCCTTGGTGGGGCTGCGAAACTTGGTGATGCCTTTACGAGCGAGTAACTTTCATTACCACGAGCTGAAACACATCGTGTTTGTGGGCTCGCTGGACTATCTGAGGAGAGAATGGGAAACGCTTCACAACTTCCCTAAAGTCTCCATATTACCCGGTACGCCATTAAGTCGAGCTGATTTAAGGGCTGTCAACATCAACCTCTGCGACATGTGCGTTAtcctgtcagccaatcagaacaataTCGACGATGCTTCACTGCAGGACAAggaatgcatcttggcatcgcTCAACATCAAATCTATGCAGTTTGATGACAGCATTGGGGTCTTGCAGGCTAATTCCCAAGGTTTCACACCACCTGGCATGGACAGGTCATCTCCAGACAACAGTCCAGTACATGGCTTGGTCCGCCAAGCGTCTGTCACAACCGGCTCCAACATCCCAATCATTACTGAACTAGTGAATGACTCGAATGTTCAGTTCCTGGACCAAGATGACGATGATGACCCGGATACGGAGCTCTATCTGACCCAGCCTTTTGCCTGTGGGACCGCCTTTGCTGTCAGTGTGCTGGACTCACTTATGAGTGCGACATACTTCAACGATAATATCCTCACGCTGATCCGGACGTTGGTCACGGGAGGTGCCACGCCGGAGCTGGAGGCGCTGCTGGCGGAGGAAAACGCGCTGCGCGGAGGTTACAGCACGCCGCAGACGCTGGCTAACAGGGACAGGTGTCGGGTGGCCCAGCTGGCCCTGTACGACGGGCCCTTCGCAGACTTAGGGGATGGCGGCTGCTACGGGGACTTATTTTgtaaagcattaaaaacatacaaCATGCTGTGCTTTGGGATCTATAGATTAAGAGACGCGCACCTAACTGCACCGAGCCCGTGCACGAAAAGATATGTCATCACCAACCCTCCCTACGAGTTTGAGCTGGTCCCCACAGACTTGATCTTCTGCCTGATGCAGTTTGACCACAATGCGGGCCAGTCTCGAACCAGCCACTCCTCTCATTCCTCGCACTCGTCCAGCAAGAAGAGCTCCTCTGTTCACTCCATCCCAGCCACCAACCGGCAAAACCGCAGCAGCAAGGCCCGCGAGGCCCGAGACAAACACAATGCAACAAGGATGAATAGAATGGGCCAAGAAAAGAAATGGTTTACAGATGAACCAGAAAATGCCTACCCAAGGAACATTCAAATCAAGCCGATGAGCACTCACATGGCCAATCAAGTCAATCAGTACAAATCCACTACCAGCCTGATTCCACCTATCAGAGAAGTCGAAGATGAATGCTGAATCCCTGGCCTTTGATGACGTGGAGGGAGTCGGAGCATCCAGTCgtttaaacaaaaaagagagagagagtgaacatGATGAGATGGTTACGATGATGACGATTCACTGTACTTCCCTTGCACCACAGCTCAAGGGTTTTGTTGCGATCATGGGAACTGGAAGGGACCTCTTATGTGTATACCTTTAACGTTACTTCCATGCTTTTGGTAAcatttaatttctaaatgtaTACATAGTGATGTACATAATGACAATCAAGTAAGGATTGTACAGCGCCCCCTAGCACTTTTTGAAATTAtgttaaaatggaaaaaaagtacTTCCTGTAATTCTTTGCAATATCTCATTTCTGTGGTGACCTGACTCTGTGCAGAAGGGTTTGTGTTATGGAGGATGAGGGTCACAGTCACTCAGCTCATCCTGACATTACCCAAAGAACCTCATCTGAAGCGTCAGATAAGCCCCACTCCTTGAGTTACGCATCCTCATCTGCTTCTTTTTGCACTAAACGTAATCAAGTTATTGTCGAAAATaacttgaagaaaaaaaagaaaaaaaatcaccaacATCAGATGTTGCTCCGGGTTGCTCACTGGATCACGGAAAACGTTCATTTTCCTTCCGAATTCACTGCATGGCAGGATTAGCAGTGTGTAGCAGGAACAGTGGCGTTCAAGGAAATGAGTGTGACGGCTGTGCACCAGGGGCATTCATTCAGCTGAGTAAATGTTGCGTCACCCAACTCGGACATGTAGAGAGGGAAAAGTGGTCTCGTTTCCATCCATACACACCATCCAGGCCATCGTATACGTGGGAATGTATTTGCCATATTTCTCTAATAATGCAAAAGAGTGTCCCCAACGTAGCCCTACAAAATTGGCAATACATTACGAGGATATGCACTACTTTTGTTGACGTCTTTCCATCGTGCTTGACTGCTGGTTTGCCGTGGTTGGAAAAAATTGTGGTGCGTGATGAAGGCTCCTAACGAAGCCTAAGGAAACGAATCAAATGCGTGTTGGTGCCTGTGGATCTGTTgtccataggaaatgaatggatTGCACACTGCACTCACCTGCTGATAATAATcctaatgatgatgataataactATGATTGAGCTTTTAAACCATATGTTAACCAACGTTCTGTCTCAATGGAACATTGTTAAAGCTGACCTTATGCGCtaatcattaattaaaacaCATGACAGTACAGTTTGATATGCCACATATTGCGAAAAGTGGGCATCCATGGTTCCTCCTTTTGAGTGAAGCCACTGCCTGACACATTGTTGGCACAGAGGCAAAAAAAGACATGCTTGGATGTTCTCTGTGACTAACTGTGatgccttaaaaaaagatcaaagaGGTCAGCAGACAGATACAAAAGACAAGCTCAATCATAGTTTGTCAGTTATCATCCAAAAAGACGTGAACCTTGACAATATCTTTGTGTTGCTTTGGTGTAGTAGACTggatcgaatgctagatctacACTTAACAAGACTGGAACACGCTTGTGTAGCCTTTACGTTAAGTGGGAAGTATACAAATACTAAGCAGAACCTTTGGACTTTGCTTCGAAGGTTCTGTCAGATTTATACATACTGTACGTACatacttattttttatccaCATGAGCGTAATcattttgtacttatttttatacatatcaAAGAactttatttctaaatttatCTTAAATGCATCTTACCAAGTCTACAGTGCACACCAATTCAGTTTGTCCATTTTTACCCTTGGGAACAGAACATATCACATTGCTTTAtcaaaaaaggaacaaaaaaaaaaagacaagacaagattaGACGAGCTACATATCTAGCTTATGTTATAGGAGACAACCTGAGTCACAAAGGTACAACCTCAGCTCTTTGTTCGTTCTCCTAGGAGTGTGCTTCGAAACGTGGGCTGCTTTGAAGGACCTTTGTAGCTATATCGATTATCAAATTGTGTAGACTactatgttttattttcattggctgagataaataaaaatatattaatatttatatatatatatatatatatatatataatgaaattcATACAGTGCTTAGATgtaaaacaatagtttaattTCAAATGAATTAAAAGCGATGGTGATAAGCTTCTATTGACTTAGAAGAGGGTGCATGAAGAGGGgcaattgttaaaaaaaacacctaccGTTTGCACCTACTCTTTCTTTTCTGAGGGTAGAACTGAGAACGCTGTCGTTGTTAATATTGACCTAAATTAGGTCTTCAGAGGATTCAGAGGACTGTGCTGAAGTATTTTCATGTGCATACACCTATAATTATACACTGGGAACTGTCTGTGTGTTCAGATGGCACAATGAGAAGAAGACCTATAGAGACGCTCGGTCAGCAGTGAGCCAATAGCCATATATGATTGTagacataagaaaaaaaaaataacaaaacgaCATCGCTACGATTCCATCTACTGTGGAAAAAAAGCGCATAGTGTCAAAGTATGTTGTGTAAATTCTGCCCATTTTAGGCCACGTTTTATTTTCCGACAAAAAAGGATCTCAGCTTTAATGTTTGTCTAATGGATGTAGTATGATCCTACTGCAGCCACCTAGGCTTTGTCCTGAAGTGATATTTTGAATTGTGAATACATTGATGTTACACTTTTGTAGCAAGTagagttacttaaaaaaataaacgatGTGAGTACaatgtatgtaaaattggaCTGTCAATAACATACTTGCtagcctgaaaaaaaaagaattctgaCCTAAAATGAATCATAAATCACTTTACATTGGAGTTCAAAGTCaaattatcttttattttctttataggTGATTTGTCTATGTAAGATCCTTTTCCTGTAATGAAACGTCTGCGGTACATTACAAAGAAAAGCTCCAGAATTACACTGAAAGCAGGTTTCATTTGATGAAAGTGCTGTATAATAGAGGGATTGGGAGTCTAGCTTAAGTTTCACAGTAGGCATGCTGTATTTTTATGTGAATTCTTTAACGTCAGAGTTTACATTCCATTTTGCTAGCTTTTGAGGCTTAGTTTTGCTACAGTGCTGCGCTCATCATTTGTTTAAAGCTATCACAGTCACTAATTTTGTTTACAGAGTTCTCtttatctgttttatcttttttttttattatttagactGCTCAGAAATCAAACCTGACAATACAACCTTAAGCAGGATGATTCATTCAAACCAAAAGCAATCGGTACACATCTCAAACCTTTACCCGTTCAGTAGATTTGGGACGTTTTCTATCCCCCAGTCTGTCCGTCCCCAAAGTGATCAACAGTGGTCGTCCTTCAGCTTGACAttcttctccaaaaaaaaaatatccacagAAAACCCAGATGATTTGTACTGTTTGTGCTGATCATCATAAGGTAAAAAGATATCCTCTACATATTAATCAGACTGTTTAAAGTGCCATGACAGTGTCTCTTCTGCAGCATCTTTCAGACATGTGTTAAAATCAGGACTCACACTGAACAGAGGTGTCTAACACTGGCATGGAGAACATCCAAGCTATCCACGCCTCCATGCCAGTGCAGTGCCAGGCAGTGCGGCCAGCCCAAAGGAGGAACACATGAAGACCCACTATAGCGAAAAGTGGCATCAAAATGGGCAAAAAGTATTCACATATGCATAAGCCCAGCTGTACAAACTTTACCACGTGTGGTTTTAATACATACCACCATAAATAATGAACGCAGTGAGACATAAACTGATGGACTAACGCTGACTGAAAGATGCAGCAGGGGCACTAattgagttttttatttattttgtgaacACCTGTCTACTTGTTCAGGAGTGTTTTAGCCCAATGATATCAACTTCAAGTGCAAACTTACTGATACACGTCGTACAACACTGTCGCATTGCGTACTTCTGGCAGTTTTACGCTACAGTAAAGACTGAGTGTTACTAAACTAAAGTAGGAATTGTATAGAATAAACTGCTGTGAGGGAATGAAGTCTTAAAAAGCTGAACTGCATTTggatgattttttatttttatttcaataaagcatatatttaattattggcATATTCATTACAGGAAAAAGGAGTTTCTCATAGAAGATTTAATCGTTTGAACTGTTTTAGCTAATGGATAAATGGAGAAATTGATGGTGCTGAGTTGATCTACCTGACTCTGTCAAATATAACCTGCTGATAAATATACTGTCTTGTACAAAAAGTTTGTACATAAATTGTACatgtttctttttgtattttctcaAATTAAAATGGATGTATTTGTGTTCTAAA

Function

GO:

id name namespace
GO:0006813 potassium ion transport biological_process
GO:0016020 membrane cellular_component
GO:0060072 large conductance calcium-activated potassium channel activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU296463 lncRNA upstream 29377 22533993 ~ 22534421 (+) True G218455
TU296462 lncRNA upstream 84812 22478229 ~ 22478986 (+) True G218454
TU296450 lncRNA upstream 106575 22456833 ~ 22457223 (+) True G218451
TU296449 lncRNA upstream 110616 22452955 ~ 22453182 (+) True G218450
TU296424 lncRNA upstream 137362 22426127 ~ 22426436 (+) True G218434
TU296577 lncRNA downstream 473404 23291508 ~ 23292077 (+) True G218561
TU296595 lncRNA downstream 620130 23438234 ~ 23446098 (+) True G218570
TU296594 lncRNA downstream 623798 23441902 ~ 23446098 (+) False G218570
TU296605 lncRNA downstream 691781 23509885 ~ 23606964 (+) True G218576
TU296688 lncRNA downstream 878473 23696577 ~ 23697870 (+) False G218651
XM_022684846.1 mRNA upstream 10340 22466479 ~ 22553458 (+) True dlg5
XM_022684848.1 mRNA upstream 10340 22466479 ~ 22553458 (+) False dlg5
XM_022684847.1 mRNA upstream 10340 22466479 ~ 22553458 (+) False dlg5
XM_022684849.1 mRNA upstream 13528 22466478 ~ 22550270 (+) False dlg5
XM_015603366.2 mRNA upstream 111861 22435389 ~ 22451937 (+) False anxa11
XM_007240294.3 mRNA downstream 474006 23292110 ~ 23295682 (+) True znf503
XM_007240293.3 mRNA downstream 590994 23409098 ~ 23414421 (+) True LOC103038538
XM_022684565.1 mRNA downstream 600010 23418114 ~ 23421870 (+) True LOC103038211
XM_022684451.1 mRNA downstream 606505 23424609 ~ 23433147 (+) True LOC111195938
XM_007240272.3 mRNA downstream 965701 23783805 ~ 23834228 (+) True tet1
TU296278 other upstream 344938 22217299 ~ 22218860 (+) True G218351
TU296281 other upstream 344938 22218117 ~ 22218860 (+) False G218351
XR_002651938.1 other upstream 467146 22060966 ~ 22096652 (+) False mark3
XR_002651939.1 other upstream 467146 22060967 ~ 22096652 (+) False mark3
TU295704 other upstream 2148155 20412244 ~ 20415643 (+) False LOC103032529
TU296687 other downstream 878473 23696577 ~ 23708243 (+) True G218651
TU296854 other downstream 1241107 24059211 ~ 24063788 (+) True G218758
TU297241 other downstream 2024198 24842302 ~ 24842533 (+) True G219050
TU297354 other downstream 2343838 25161942 ~ 25172243 (+) False dapp1
TU297390 other downstream 2438846 25256950 ~ 25302587 (+) True G219171

Expression Profile