RNA id: TU296595


Basic Information

Item Value
RNA id TU296595
length 1586
lncRNA type inter_gene
GC content 0.47
exon number 9
gene id G218570
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 23438234 ~ 23446098 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGGAGTTCAAAGACTTTATTGAAAagtttacacatacacataagGACCTCTAAGGTTTCGTGAAAGTACGACCTCAGCAAGTCAGGGTCATGATGGCGACACTGAACGCTTTAGGTACTAAATCACCACATCCAGAGTATCCATTTTGGCATTACCATTAGCTTCACCTAGTCGTCTGTGCAGAAAACAAAAAGCCAGCCGTGTTTTCTGAATGCAAATTCTTTTCCTTTAGACATTCATCCAATTGGGCCACCCGAAAACTGCTCAGTTCAAGGGCAAGCTTCAAGTACTCTTCCATTATGTTTCAATTCTGATGGCTGACAAAGCAAAAATGGTACAGTACGGCGTAAGCATGTCCTTGTGTGTatggaaagaaaaggaaaaccaaaagtaaaacaaagAACCTTTAAAATTGAGTTAAGTGGTTGCATGAGCTGTTCTCAGACGACTAAGGAATATCAGATGACACAAAGGATGAATCAGTTGTCCCCAGACCACCAAAAGCAATGTCTTACTGAAGAGGTAACATGCAGGCTTAGATGCCCACTGCTGCAAATGGAGCATTTCACTGATATGGCAGTGCTGGATTCAGATGAGGAAATAACAAATAACTACAAACCAAAAATGGGCACCATGAGCgggaaaggaaaataaaaccaCCACTGCAATggttcctaaaaaaataattgcttttgctgtagcctttgaacacatcccatcccatcccatccagAATTCCCCTGCTGGTTATGTTGGAGACAGATTTAAGGCCAGATTCCTCTGATATTCCCTCGTCCCTGATTTGAGGAAGAGCCGGGCTTTAGgcctccagctccagccccAGGCCCAGCTTGTGACCACCAGCGTTGATGCTCTTTCCATCAACCAGGGCAGACAGCGTCAGCTTCACACCTGGTCTCAGGGTCTGCGTGTAACCAACACCAACAAGACTAGTGTTGTTCACTTTGGCGCTGATGGAAGCATCCTTGTCCAGCTGGTACTTAGCAGCAATACCAAAGCGTGTGCTATTGCTGCCCGCAGTCCAAGCCAGGTTCACTGCTGTCTCCAGGTTATCACTCACTTTCTGATAGATGGAACCTCCAAACTCTGAGCCATCGTTACGTTGGTGTGCAGTTGGAAGTCGCCTGTTTTGTAGCCTACAGCAAAGTTGTTCTGGGTCATCTTTGACTTGGCTGTGTCAAAAGACATCTGGTAACCGGCAAGCCATCCCTCGTAACCGACCACTGCGGCACCATGGATAGTTGGGCCGGCAAAATCGAAGTCGACGTCACAGCCCAAGTTGACAAACTCACGTTTGTAGGCGGTCTTGACTTTGCCGCTCTTCTTGCGTGTTTGGTGAGAAGGTCGTATCGAAAGTCAGCTTCAGCCCCTTTGCAATCTGATCTTCAATGGTGATCTCTGTTCCCAGAGTGTTGTCAGTGTTCCACTTCTCCGTAAAGGTCAGGCCATACTCAGACCTCTTGTATTTGGTTAATATATTGGTCTGGCGATCAACTTAAACAAGTTTAATCAACTTCTCCCCGACGCTGCTGTCTGTGGTGAAGCGCACCGGCTGGAGGGCGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU296577 lncRNA upstream 146157 23291508 ~ 23292077 (+) True G218561
TU296457 lncRNA upstream 620120 22797312 ~ 22818114 (+) False kcnma1
TU296486 lncRNA upstream 633768 22803912 ~ 22804466 (+) True G218477
TU296483 lncRNA upstream 709734 22727646 ~ 22728500 (+) True G218474
TU296463 lncRNA upstream 903813 22533993 ~ 22534421 (+) True G218455
TU296605 lncRNA downstream 63787 23509885 ~ 23606964 (+) True G218576
TU296688 lncRNA downstream 250479 23696577 ~ 23697870 (+) False G218651
TU296695 lncRNA downstream 263486 23709584 ~ 23714345 (+) True G218654
TU296697 lncRNA downstream 269311 23715409 ~ 23715662 (+) True G218655
TU296699 lncRNA downstream 270614 23716712 ~ 23719841 (+) True G218656
XM_022684451.1 mRNA upstream 5087 23424609 ~ 23433147 (+) True LOC111195938
XM_022684565.1 mRNA upstream 16364 23418114 ~ 23421870 (+) True LOC103038211
XM_007240293.3 mRNA upstream 23813 23409098 ~ 23414421 (+) True LOC103038538
XM_007240294.3 mRNA upstream 142552 23292110 ~ 23295682 (+) True znf503
XM_022684862.1 mRNA upstream 620130 22563798 ~ 22818104 (+) False kcnma1
XM_007240272.3 mRNA downstream 337707 23783805 ~ 23834228 (+) True tet1
XM_007240273.3 mRNA downstream 337707 23783805 ~ 23834228 (+) False tet1
XM_007240270.3 mRNA downstream 389743 23835841 ~ 23841310 (+) False LOC103032634
XM_007240271.3 mRNA downstream 389823 23835921 ~ 23841403 (+) True LOC103032634
XM_007240268.3 mRNA downstream 404817 23850915 ~ 23857518 (+) True LOC103031995
TU296278 other upstream 1219374 22217299 ~ 22218860 (+) True G218351
TU296281 other upstream 1219374 22218117 ~ 22218860 (+) False G218351
XR_002651938.1 other upstream 1341582 22060966 ~ 22096652 (+) False mark3
XR_002651939.1 other upstream 1341582 22060967 ~ 22096652 (+) False mark3
TU295704 other upstream 3022591 20412244 ~ 20415643 (+) False LOC103032529
TU296687 other downstream 250479 23696577 ~ 23708243 (+) True G218651
TU296854 other downstream 613113 24059211 ~ 24063788 (+) True G218758
TU297241 other downstream 1396204 24842302 ~ 24842533 (+) True G219050
TU297354 other downstream 1715844 25161942 ~ 25172243 (+) False dapp1
TU297390 other downstream 1810852 25256950 ~ 25302587 (+) True G219171

Expression Profile