RNA id: TU296605


Basic Information

Item Value
RNA id TU296605
length 218
lncRNA type inter_gene
GC content 0.55
exon number 2
gene id G218576
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 23509885 ~ 23606964 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCTGGACCTGCTTGCAGAATGACCCAGTGGCTTTTCATTCTTGTCCTTGGCCTTTCCGCTGCTGCCAGATCCCCTGGAGGAAGTGACATCCCGGGGGATGACAGAGATCTGATGCAGTGGCATGTTCATCCCAGCGGGCCAGTGGagctcacacacacgcaaactGAAACCagcccaccaccaccatcagcaTGATGGAGAGAACCATTAATGcaaat

Function

GO:

id name namespace
GO:0006030 chitin metabolic process biological_process
GO:0006032 chitin catabolic process biological_process
GO:0006040 amino sugar metabolic process biological_process
GO:0042737 drug catabolic process biological_process
GO:0009056 catabolic process biological_process
GO:1901565 organonitrogen compound catabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:1901575 organic substance catabolic process biological_process
GO:0046348 amino sugar catabolic process biological_process
GO:1901071 glucosamine-containing compound metabolic process biological_process
GO:1901072 glucosamine-containing compound catabolic process biological_process
GO:0017144 drug metabolic process biological_process
GO:0044248 cellular catabolic process biological_process
GO:1901135 carbohydrate derivative metabolic process biological_process
GO:1901136 carbohydrate derivative catabolic process biological_process
GO:0006022 aminoglycan metabolic process biological_process
GO:0006026 aminoglycan catabolic process biological_process

KEGG:

id description
ko00520 Amino sugar and nucleotide sugar metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU296595 lncRNA upstream 63787 23438234 ~ 23446098 (+) True G218570
TU296594 lncRNA upstream 63787 23441902 ~ 23446098 (+) False G218570
TU296577 lncRNA upstream 217808 23291508 ~ 23292077 (+) True G218561
TU296457 lncRNA upstream 691771 22797312 ~ 22818114 (+) False kcnma1
TU296486 lncRNA upstream 705419 22803912 ~ 22804466 (+) True G218477
TU296688 lncRNA downstream 89613 23696577 ~ 23697870 (+) False G218651
TU296695 lncRNA downstream 102620 23709584 ~ 23714345 (+) True G218654
TU296697 lncRNA downstream 108445 23715409 ~ 23715662 (+) True G218655
TU296699 lncRNA downstream 109748 23716712 ~ 23719841 (+) True G218656
TU296718 lncRNA downstream 141759 23748723 ~ 23749228 (+) True G218675
XM_022684451.1 mRNA upstream 76738 23424609 ~ 23433147 (+) True LOC111195938
XM_022684565.1 mRNA upstream 88015 23418114 ~ 23421870 (+) True LOC103038211
XM_007240293.3 mRNA upstream 95464 23409098 ~ 23414421 (+) True LOC103038538
XM_007240294.3 mRNA upstream 214203 23292110 ~ 23295682 (+) True znf503
XM_022684878.1 mRNA upstream 696110 22563798 ~ 22813775 (+) False kcnma1
XM_007240272.3 mRNA downstream 176841 23783805 ~ 23834228 (+) True tet1
XM_007240273.3 mRNA downstream 176841 23783805 ~ 23834228 (+) False tet1
XM_007240270.3 mRNA downstream 228877 23835841 ~ 23841310 (+) False LOC103032634
XM_007240271.3 mRNA downstream 228957 23835921 ~ 23841403 (+) True LOC103032634
XM_007240268.3 mRNA downstream 243951 23850915 ~ 23857518 (+) True LOC103031995
TU296278 other upstream 1291025 22217299 ~ 22218860 (+) True G218351
TU296281 other upstream 1291025 22218117 ~ 22218860 (+) False G218351
XR_002651938.1 other upstream 1413233 22060966 ~ 22096652 (+) False mark3
XR_002651939.1 other upstream 1413233 22060967 ~ 22096652 (+) False mark3
TU295704 other upstream 3094242 20412244 ~ 20415643 (+) False LOC103032529
TU296687 other downstream 89613 23696577 ~ 23708243 (+) True G218651
TU296854 other downstream 452247 24059211 ~ 24063788 (+) True G218758
TU297241 other downstream 1235338 24842302 ~ 24842533 (+) True G219050
TU297354 other downstream 1554978 25161942 ~ 25172243 (+) False dapp1
TU297390 other downstream 1649986 25256950 ~ 25302587 (+) True G219171

Expression Profile