RNA id: TU296635


Basic Information

Item Value
RNA id TU296635
length 991
lncRNA type sense_over
GC content 0.41
exon number 2
gene id G218602
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 23459492 ~ 23467044 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ccctgagagagcacaaTTTGTCTTGcattctctgggtgggtagatgtgctctttcctctcatcactcttaagggtgatgttgatcagcactaagcatctgtgagctgatgtatcagaaccaagtcgctgcactttcctctgagcgcgctgtgatgcgactcagcaatgctgcatcatcagcagttcgaaaagaggcgctTGCGGACTTCACATgttttggaggaggcatgtgctagtcttcaccttcctggtgttgaAGCATCGCTAGTAATAAGGcgagtcttaatgagtgggttgggtaattggctctGTAAAAGAGGGATAAAAATGGGATTAAATTaggaataaaattatataaaaaaagactatAGTTCTAAATTGCattataaatgaaaatgagaagGTAGGATGGAGGTATAATCGGTAAGTTGGAGGTGTATTAAGCAGAGCTCCTCATTTTTAAGCATCTTGTGTTTGGTTCTAGAGTCTGTTCTCCTGTTCTGTCTGCCCCGTAGCTACAGCAGTGCGCTTGgcatacatttacacaatgTAGAACATTCCAGAATCATATCGTATGTGCACAGAAATGACAGATTGTTTAGAGCAATAGTCATTTTGTGATGCTTCACAGAACACTCCCTCATACGATTGATTCTGACGTAGATATTCTGTTCATTCATGACAGTGAATTGCTTTTTACTCCCTCTTGAAGCCTGGTAAATGTTTATATAAGGGCCGCTTTCCTGAACAAGAGCCTATTCGAAGACCTCCTTTACACAGAGTCACTACATGCATGTTCTTGAGTATCAGATTGTAACCGGATAAGGCCAAACCACATCAAAATTTAAGGCTTATTTATGATGTATACCAATCTGACCACTCAAATCATGTCCGAGATGCATTTGAGCTGCaccaaaatgaacatttctgtCCAAAACCAGAAGTGAATACCATGTGTCAccattgcataaattaaatagcctaaTGCATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU296543 lncRNA downstream 616278 22843001 ~ 22843214 (-) True G218527
TU296533 lncRNA downstream 641388 22809819 ~ 22818104 (-) True G218519
TU296444 lncRNA downstream 1007556 22441756 ~ 22451936 (-) False G218448
TU296447 lncRNA downstream 1010296 22445856 ~ 22449196 (-) True G218448
TU296436 lncRNA downstream 1040119 22416898 ~ 22419373 (-) True G218441
TU296623 lncRNA upstream 138438 23605482 ~ 23655145 (-) False march8
TU296777 lncRNA upstream 291387 23758431 ~ 23760825 (-) True G218698
TU296784 lncRNA upstream 316774 23783818 ~ 23784105 (-) True G218703
TU296776 lncRNA upstream 318323 23785367 ~ 23786980 (-) True G218697
TU296790 lncRNA upstream 348827 23815871 ~ 23816669 (-) True G218709
XM_022684882.1 mRNA downstream 13367 23438656 ~ 23446125 (-) True LOC103037680
XM_007240302.3 mRNA downstream 173043 22846282 ~ 23286449 (-) True lrmda
XM_022684842.1 mRNA downstream 1064572 22379123 ~ 22394920 (-) True LOC103042035
XM_022684843.1 mRNA downstream 1064576 22380846 ~ 22394916 (-) False LOC103042035
XM_022684844.1 mRNA downstream 1064580 22382112 ~ 22394912 (-) False LOC103042035
XM_007240289.3 mRNA upstream 195654 23662698 ~ 23691895 (-) True zfand4
XM_022684890.1 mRNA upstream 226212 23693256 ~ 23708270 (-) False washc2c
XM_022684888.1 mRNA upstream 226212 23693256 ~ 23708270 (-) False washc2c
XM_022684887.1 mRNA upstream 226212 23693256 ~ 23708270 (-) False washc2c
XM_022684889.1 mRNA upstream 226212 23693256 ~ 23708270 (-) False washc2c
TU296561 other downstream 613287 22844833 ~ 22846205 (-) True G218545
TU296239 other downstream 1402999 22052687 ~ 22056493 (-) True G218329
TU296124 other downstream 1604351 21851372 ~ 21855141 (-) True G218240
TU296033 other downstream 1702093 21755426 ~ 21757399 (-) False LOC111195999
TU295823 other downstream 2252690 21160374 ~ 21206802 (-) False LOC103031576
TU296808 other upstream 383919 23850963 ~ 23857507 (-) True G218720
TU296881 other upstream 588481 24055525 ~ 24056877 (-) True G218781
TU297852 other upstream 3005584 26472628 ~ 26474247 (-) True G219510
XR_002651956.1 other upstream 3271760 26738804 ~ 26757592 (-) False zbtb18
TU298086 other upstream 3359984 26827028 ~ 26827527 (-) True G219671

Expression Profile