RNA id: TU296787


Basic Information

Item Value
RNA id TU296787
length 2113
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G218706
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 23822483 ~ 23824595 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CAGTCACAGGAGGGGAGCTCCGGAGTTTTTTTGGAGGGTGTGTTGATTAGATTCTTGGTTGGAGTGTCCAAGTACTTCAACGGAGATTCCAAAAAGCTGTTAAGCATATGCTTGGTGGGAGTGTTTTCTTCAACGGATTCAGTGTTAGCATTTTCCATGTTTCCAGCTGACACAGACAAAACGGTGACAGCGCCAGCCGTGTCCACTTTGTAACGTCCATTCTGACCAAAGGAAGTCTGCCGCGGCTCACAGCTTAGGCTGTTTACTTTATGGCACCTCCCTGGACTCCCTGGCAATGGATCTGCACCAGGGACACTAGGCATGGCATACTGGGCTTGTGGATTAGCACCATGATTTAGCACACTGTATGTTTTCGATACCTGAGAAATCAAATGTTCTTCACATTCATACTTCTGGCCATGTGTAGCACCTAGATGACCATTTGTGAGACTGTGACAATGTCCGTTGGATCTGAATTGGTTAACATGGGAATGACTCAGAGCTGCGTGGTCTGTTTTGTAAGTAAAAGCTTTCTGATTTCCGGAACTCTTGAGAGTCTGCATGTCCAAGTCTTGTCTCTTGCTGCTAAAATGGAACAGCTGATGTTTCTCATGATGAGCCTGTGCTAGGTATTTTTTCAGGTCTATCTGAGTCTGTGGGAGAAACGGGCTCCACTTGGGTTGTGGTTTGGGCTTTTCCTGCAAGGCCACATGCTGGGCTTTTGTCTTGAAAGGGGGTTTGCTATTGGGTGTCCTTTTGGCTAGTGGTATCCTATGGTTGCCTCCCTCAACCTCAGAGGCTTTTTTCTTTGATATCCTGGGACTTGAGGGAGTTGTTCTTGGTTTCCGttgcttttttacattttgtccaaCGACATGATGGTTGTATTTTATGGTCTGTACTGGCATCCCTTTGGGGGGACTGTTCTCAGAAGACATGGGATTGGTTCTTGATTGAATTATGAATGCAAGTTGCACCAACTGAGCTGCAACTTCCTCCTCATCTCTCCTCCTTGAGGTCTGCGTCCTTTCAACAtgcttaaaagtcttaaaagtgcCATCTAacttttctgttttacaaaGTGCTTGACTTACTCGTCCATTCTCTGGACTATGCAAGAGCTTATCATATGAGCTAGCTATTAAAAGATCCTGTAAGGAGAGTTTGGGGTGGGTGGGGTTTTCCTGTCTGTTCAGAGGGCTGCAAATTACAGAAGTCTGATGTGAATTGATTACAGAGACTTTATTGGAGATGACCTCAGATATGGGTTTAGCCTCTTGGACCGGACTTTGCCTGCTTGATGAAACATTTGCTAATTTGTTACAAGATTCTTGTGGAGGGTCCTGAACTTTAGAATCTGCCTTGACAGGAGCTGATTTTGGGGTAGCTGCCAGCTGGGTCAAGGCCTCAATAGCTATTGCCTGATCAATGCTTATGTTCCTATGCTCAACTAAAGACTGGACACTATTATTAGTCAGCGGAACTGGGTCTTTCGGATGGGAGTTATCAGCACCTGCTGGACTGTTAGAAGTCCTTTCCTGATGTGAATGACTCTGATATggttcttcttctctttcagtTTTAATATTACAGGCATTTGAGGTCTGAGGACCAACTGTCTTCTCCTCCAAACCCTTCAGATCAGAGATGGTTGAACATACAACATTTGCTAAAGTAGACAAAGCATCCTGGTAGAAGTCGCTGCTGCTTAGGTAGGATGTGCTGTGTTGATCTGACACTGTGCTAGGCTCTTCTAGCTTGATCTTCTTCAGAGGAACTGTCTGTGCAGGAATTGCCTCAGGTGTCTGGCTTTTGGTGGGCATGTTCACAGTCCTTTGAGACTTAGACTGCAGGTCAGTGGGATCTCTGTGATCCTCAGTGTTTGGTTCCATATGATTAGCACCATTGTGGGAGCTTAAAGAGCTCTGGTGAGTAAGAAGTGCATGGTGGCTGACAGCAGGCTGAAGGGCTCTTTCGGCTGGTGCTGGTTCAGTGTCGTGCCCGAGAGGCGTGGGAGAGTCAGGTGGAGCGGAGTGTGCTTGAGATACGTCACGCGCCTCTTCCTCTGGCACCACACAGGTCTCTTCCATCTGCTCTGAATTAGTGCCATTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU296790 lncRNA downstream 5814 23815871 ~ 23816669 (-) True G218709
TU296776 lncRNA downstream 35503 23785367 ~ 23786980 (-) True G218697
TU296784 lncRNA downstream 38378 23783818 ~ 23784105 (-) True G218703
TU296777 lncRNA downstream 61658 23758431 ~ 23760825 (-) True G218698
TU296623 lncRNA downstream 167338 23605482 ~ 23655145 (-) False march8
TU296792 lncRNA upstream 3082 23827677 ~ 23827885 (-) True G218711
TU296793 lncRNA upstream 3897 23828492 ~ 23829019 (-) True G218712
TU296794 lncRNA upstream 4477 23829072 ~ 23829444 (-) True G218713
TU296795 lncRNA upstream 6371 23830966 ~ 23834202 (-) True G218714
TU296797 lncRNA upstream 11184 23835779 ~ 23841648 (-) False LOC103032322
XM_007240279.3 mRNA downstream 59679 23750134 ~ 23762804 (-) False slc25a16
XM_015603371.2 mRNA downstream 59681 23750134 ~ 23762802 (-) False slc25a16
XM_022684891.1 mRNA downstream 59801 23750134 ~ 23762682 (-) False slc25a16
XM_007240275.3 mRNA downstream 59801 23750134 ~ 23762682 (-) True slc25a16
XM_015603372.2 mRNA downstream 59801 23751920 ~ 23762682 (-) False slc25a16
XM_007240269.3 mRNA upstream 16846 23841441 ~ 23849800 (-) True LOC103032322
XM_007237748.3 mRNA upstream 206279 24030874 ~ 24040363 (-) True LOC103041217
XM_022684895.1 mRNA upstream 209892 24034487 ~ 24040368 (-) False LOC103041217
XM_007237747.3 mRNA upstream 255272 24079867 ~ 24091509 (-) True LOC103040609
XM_007237744.3 mRNA upstream 313227 24137822 ~ 24255139 (-) False lzts2
TU296561 other downstream 976278 22844833 ~ 22846205 (-) True G218545
TU296239 other downstream 1765990 22052687 ~ 22056493 (-) True G218329
TU296124 other downstream 1967342 21851372 ~ 21855141 (-) True G218240
TU296033 other downstream 2065084 21755426 ~ 21757399 (-) False LOC111195999
TU295824 other downstream 2615681 21160374 ~ 21206802 (-) False LOC103031576
TU296808 other upstream 26368 23850963 ~ 23857507 (-) True G218720
TU296881 other upstream 230930 24055525 ~ 24056877 (-) True G218781
TU297852 other upstream 2648033 26472628 ~ 26474247 (-) True G219510
XR_002651956.1 other upstream 2914209 26738804 ~ 26757592 (-) False zbtb18
TU298086 other upstream 3002433 26827028 ~ 26827527 (-) True G219671

Expression Profile