RNA id: TU297295


Basic Information

Item Value
RNA id TU297295
length 400
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G219102
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 25084457 ~ 25084856 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGCTTTCGAGGAGGCGTCTGCTGGTATCCGTTCTCGCAGATTGGCTGTAGAGTTGGTATGATGGAGAGAGGCTGGATTTAACAATTCCAGCCATCGTAAGTTCTGTGGTGATGTCTGGATTTGGTACAGTTTCCTcaagacaaaatgttttcagagatacagccttagaggtaaaaatatacaggggttagacaatgaaactgaaacacctggttttagaccacaataatgtattgtcctgacggacagttctggtgaaaacaggacagttgagatgcacattgaattctgccgtgatttagGCAGTCGtgggtttatgttttttggataaaatccgggtttagcacccgaacatccctttcagacagcttcctcttgcgtccacagttattcctgttgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU297267 lncRNA upstream 42668 25041237 ~ 25041789 (+) True G219074
TU297262 lncRNA upstream 74928 25009141 ~ 25009529 (+) True G219069
TU297260 lncRNA upstream 137386 24946724 ~ 24947071 (+) True G219067
XR_002651944.1 lncRNA upstream 291636 24790077 ~ 24792821 (+) True LOC111196006
TU297100 lncRNA upstream 443410 24589310 ~ 24641047 (+) True G218948
TU297338 lncRNA downstream 49097 25133953 ~ 25138947 (+) False G219141
TU297340 lncRNA downstream 49097 25133953 ~ 25136063 (+) True G219141
TU297353 lncRNA downstream 93797 25178653 ~ 25187678 (+) True G219144
TU297352 lncRNA downstream 96589 25181445 ~ 25181983 (+) False G219144
TU297359 lncRNA downstream 108052 25192908 ~ 25194235 (+) True G219150
XM_015602442.2 mRNA upstream 285858 24794890 ~ 24798599 (+) True ap5s1
XM_007237253.3 mRNA upstream 285858 24795057 ~ 24798599 (+) False ap5s1
XM_007237254.3 mRNA upstream 297117 24779609 ~ 24787340 (+) True cdc25b
XM_022684969.1 mRNA upstream 406344 24658431 ~ 24678113 (+) True LOC103045503
XM_022684917.1 mRNA downstream 76871 25161727 ~ 25174708 (+) True dapp1
XM_022684918.1 mRNA downstream 99778 25184634 ~ 25192379 (+) True rrh
XM_007237999.3 mRNA downstream 141585 25226441 ~ 25241001 (+) True metap1
XM_007238000.3 mRNA downstream 141585 25226441 ~ 25241001 (+) False metap1
XM_007237991.3 mRNA downstream 225987 25310843 ~ 25315607 (+) True LOC103043156
TU297241 other upstream 241924 24842302 ~ 24842533 (+) True G219050
TU296854 other upstream 1020669 24059211 ~ 24063788 (+) True G218758
TU296687 other upstream 1376214 23696577 ~ 23708243 (+) True G218651
TU296278 other upstream 2865597 22217299 ~ 22218860 (+) True G218351
TU297354 other downstream 77086 25161942 ~ 25172243 (+) False dapp1
TU297390 other downstream 172094 25256950 ~ 25302587 (+) True G219171
XR_002651962.1 other downstream 2140436 27225292 ~ 27236611 (+) False LOC111196018
XR_002651965.1 other downstream 2145301 27230157 ~ 27236611 (+) False LOC111196018
XR_002651959.1 other downstream 2145303 27230159 ~ 27236611 (+) False LOC111196018

Expression Profile