RNA id: TU297340


Basic Information

Item Value
RNA id TU297340
length 1542
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G219141
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 25133953 ~ 25138947 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTTTACATGACTGTTCAAGTACAAacgatttaaaaaagaacacattgtGCAGTTAATAGGTCTTATTGGTtcttaatatgtacagtattttaaacacatgtaccactttaaaatcatattcagtgatccccagtctttgTAAAATATTAGCCTGTGACTACTCTGTCAATTAAAAAATCtgacgctttacttcttcatggtgactgctcagaattacccaaaaacaccaaaaaacgcaaaacaacaaccctaaaacatctatttcaccacaaactaacaccccaatacctcagaaaaaatcctccatacataattccttaattattaatcaaatttaaaagttcaactgcaccccaatgcatcatgggaaagctctatgtcacagtatcacatgacactgtgtgggtcagtgtgtgttcctattttatatattaaaaagtacacagtaaatacaaagcCGTGCACAAAAGAACCAAACtacctcactaaagagctcatggaaAACATGTGATTGTAAGTaggatgtatattgtaaaataagtaaactttggtaaaagagattaaaaagtgaacagaaaaaaaaaaataataaattccacttatttccctgaatacccagtttttcccattagatttcccttgtgtttttgatttcacatactttagacaagtaccagtttcccagtgttcagtactgactacagagccaatacattagagcctgggagacgggggtcttttaaagcatggtcccccacgctttacttcttcatggtgactgctcagaattacccaaaaacaccaaaaaacgcaaaacaacaaccctaaaacatctatttcaccacaaactaacaccccaatacctcagaaaaaatcctccatacataattccttaattattaatcaaatttaaaagttcaactgcaccccaatgcatcatgggtaagctctatgtcacagtatcacatgacactgtgtgggtcagtgtgtgttcctattttatatattaaaaagtacacagtaaatacaaagccgtgccacaaaagaaccaaactacctcactaaagagctcatggaaAACATGTGATTGTAAGTaggatgtatattgtaaaataaataaactttggtaaaagagattaaaaagtgaacagaaaaaaaaaaataataataaattcaacttatttccctgaatacccagtttttcccattagatttcccttgtgtttttgatttcacatattttagacaagtaccagtttcccagtgttcagtactgactacagagccaatacattagagcctgggagacgggggtcttttaaagcatggtccccccacgctttacttcttcatggtgaatGCTCAGAATtaccaaaaaacaccaaaaaacgcaaaacaacaaccctaaaacatctatttcaccacaaactaacaccccaatactcagaaaaaaatcctccatacataattccttaattattaatcaaatttaaaagttcaactgcaccccaatgcatcatgggtaagctctatgtcacagta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU297295 lncRNA upstream 49097 25084457 ~ 25084856 (+) True G219102
TU297267 lncRNA upstream 92164 25041237 ~ 25041789 (+) True G219074
TU297262 lncRNA upstream 124424 25009141 ~ 25009529 (+) True G219069
TU297260 lncRNA upstream 186882 24946724 ~ 24947071 (+) True G219067
XR_002651944.1 lncRNA upstream 341132 24790077 ~ 24792821 (+) True LOC111196006
TU297353 lncRNA downstream 42590 25178653 ~ 25187678 (+) True G219144
TU297352 lncRNA downstream 45382 25181445 ~ 25181983 (+) False G219144
TU297359 lncRNA downstream 56845 25192908 ~ 25194235 (+) True G219150
TU297362 lncRNA downstream 58724 25194787 ~ 25198276 (+) True G219151
TU297366 lncRNA downstream 67971 25204034 ~ 25208010 (+) True G219153
XM_015602442.2 mRNA upstream 335354 24794890 ~ 24798599 (+) True ap5s1
XM_007237253.3 mRNA upstream 335354 24795057 ~ 24798599 (+) False ap5s1
XM_007237254.3 mRNA upstream 346613 24779609 ~ 24787340 (+) True cdc25b
XM_022684969.1 mRNA upstream 455840 24658431 ~ 24678113 (+) True LOC103045503
XM_022684917.1 mRNA downstream 25664 25161727 ~ 25174708 (+) True dapp1
XM_022684918.1 mRNA downstream 48571 25184634 ~ 25192379 (+) True rrh
XM_007237999.3 mRNA downstream 90378 25226441 ~ 25241001 (+) True metap1
XM_007238000.3 mRNA downstream 90378 25226441 ~ 25241001 (+) False metap1
XM_007237991.3 mRNA downstream 174780 25310843 ~ 25315607 (+) True LOC103043156
TU297241 other upstream 291420 24842302 ~ 24842533 (+) True G219050
TU296854 other upstream 1070165 24059211 ~ 24063788 (+) True G218758
TU296687 other upstream 1425710 23696577 ~ 23708243 (+) True G218651
TU296278 other upstream 2915093 22217299 ~ 22218860 (+) True G218351
TU297354 other downstream 25879 25161942 ~ 25172243 (+) False dapp1
TU297390 other downstream 120887 25256950 ~ 25302587 (+) True G219171
XR_002651962.1 other downstream 2089229 27225292 ~ 27236611 (+) False LOC111196018
XR_002651965.1 other downstream 2094094 27230157 ~ 27236611 (+) False LOC111196018
XR_002651959.1 other downstream 2094096 27230159 ~ 27236611 (+) False LOC111196018

Expression Profile