RNA id: TU297359


Basic Information

Item Value
RNA id TU297359
length 1328
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G219150
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 25192908 ~ 25194235 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gtaaaagtttgcatagccgCCAGcgcactatgggtttgtgcactgctgcgtgccTATGTCTGTGTGCCTGACAGAACTTATTGCGTATGTCTAGGCTTTTTTCattggtgcacctgtgttttctgtggtCAAGATAGAAATACGACAGAAAAATTACCTGAAGACACCTAATTTCCGACCGCCACGCCCATCGGCgaagatatattcacaagcacatggtgtaaaaatagacgcTGTTGTTGAGTGTAAGAAAACAATGAGGTATGTCtaattcataaatatttatagatgtagtaatgattttAGTTTAAGGAGATTTAGAAAAACTGAAAGAACCAAAACATTAATATCAGAACTGATGATCACTACTTTTATTTTCCTCTAAAGTCACCACATGGCTAAAATATACACTTACTTATAATATAGTACGTTTTCTTATTACTGTTATAAACTTTTTCAGAAGAAAGGCCGAAATGATCTCAGGATTCCCTGACGGGTTTTTAAAAAACCTGTAACAGAAAATGAGCTAGACGTATgggtgtacagtttaaaaaatttataaatGCCACAATACAAATGGATTTGATTATCTGCCTGTTAGAAGTAGAGTCaaaacttaaaggagaactctggtgtaaaatgaacttttgttgtagtaaaacatgataaaagtacagttgttgaatagcacacctccgttctcccacagcgttctgagatccagaaaacAGTTTGTCCACCcctcagactgggtgacacggggcacaatttgccccgataaatcgcttttttccaccattatccaTGCTCCAAGATACTCCACACCTTGCTacaatctggagagccctgacatttaatacgaggcattaataactttaaaagtgcacaagaagcttattaaaacctaTAACCTATAATGCTAGCTTTCAGCTCTGAGCACCGCCATATAAACATAGACATTTATACATAGATTtcacatagcctgcctcctagCATAGCAGCTGGCACCAAGAGGCAGGCTATGTGGAATCTATGTCTATATGCCTATGTCATTTTCAGTACAGTTATGGCGTCACACAGatctgaagctagcattatgggatgtaaacagtgtttttaaagagCTTATTGtgaactttttaagttattaatggcttgttttaaatgtcagggctctccagtaagtagtttttatcatgttttactacatcaaaagtccattttacaccggagttctaaTTTAATGTAGCAGAGCTGAGTTCCATGTCCAGATGCACCATGTCGGTTATAAATGTCACTATTAATTGTGTGAAGAGACCTTCTGGcaa

Function

GO: NA

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU297353 lncRNA upstream 5230 25178653 ~ 25187678 (+) True G219144
TU297352 lncRNA upstream 10925 25181445 ~ 25181983 (+) False G219144
TU297338 lncRNA upstream 53961 25133953 ~ 25138947 (+) False G219141
TU297340 lncRNA upstream 56845 25133953 ~ 25136063 (+) True G219141
TU297295 lncRNA upstream 108052 25084457 ~ 25084856 (+) True G219102
TU297362 lncRNA downstream 552 25194787 ~ 25198276 (+) True G219151
TU297366 lncRNA downstream 9799 25204034 ~ 25208010 (+) True G219153
TU297369 lncRNA downstream 15300 25209535 ~ 25215808 (+) True G219154
TU297371 lncRNA downstream 15300 25209535 ~ 25215808 (+) False G219154
TU297372 lncRNA downstream 23484 25217719 ~ 25218017 (+) True G219155
XM_022684918.1 mRNA upstream 529 25184634 ~ 25192379 (+) True rrh
XM_022684917.1 mRNA upstream 18200 25161727 ~ 25174708 (+) True dapp1
XM_015602442.2 mRNA upstream 394309 24794890 ~ 24798599 (+) True ap5s1
XM_007237253.3 mRNA upstream 394309 24795057 ~ 24798599 (+) False ap5s1
XM_007237254.3 mRNA upstream 405568 24779609 ~ 24787340 (+) True cdc25b
XM_007237999.3 mRNA downstream 32206 25226441 ~ 25241001 (+) True metap1
XM_007238000.3 mRNA downstream 32206 25226441 ~ 25241001 (+) False metap1
XM_007237991.3 mRNA downstream 116608 25310843 ~ 25315607 (+) True LOC103043156
XM_022684920.1 mRNA downstream 118098 25312333 ~ 25315607 (+) False LOC103043156
XM_022684924.1 mRNA downstream 146229 25340464 ~ 25403594 (+) True LOC103042335
TU297354 other upstream 20665 25161942 ~ 25172243 (+) False dapp1
TU297241 other upstream 350375 24842302 ~ 24842533 (+) True G219050
TU296854 other upstream 1129120 24059211 ~ 24063788 (+) True G218758
TU296687 other upstream 1484665 23696577 ~ 23708243 (+) True G218651
TU296281 other upstream 2974048 22218117 ~ 22218860 (+) False G218351
TU297390 other downstream 62715 25256950 ~ 25302587 (+) True G219171
XR_002651962.1 other downstream 2031057 27225292 ~ 27236611 (+) False LOC111196018
XR_002651965.1 other downstream 2035922 27230157 ~ 27236611 (+) False LOC111196018
XR_002651959.1 other downstream 2035924 27230159 ~ 27236611 (+) False LOC111196018
XR_002651961.1 other downstream 2035925 27230160 ~ 27236611 (+) False LOC111196018

Expression Profile