RNA id: TU297369


Basic Information

Item Value
RNA id TU297369
length 1924
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id G219154
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 25209535 ~ 25215808 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

atgcgGTCTATTTACATGAGACATCATTCCCAGTGCTGACAGCtgacttctgaggtaaatggaaTGCACTAATAACTAGACATTAGGCCTGGTCTTTAATGAAGTATATGCTTACTAACCTGATGCACAAGCTCATGGGAGATGACACTGGCCACACGTTGCTTGTTGTAAGAGGAAGACTCCTGCTCATCATACAGCAGGTTGGTCTCTCTGTAGGTGACCAGACCCCAGTTCTCCATGGCTCCTGTCCCAAAGTCTGGGATTGCTATCTGATCTGCAGATGGAAATACCATGTCTTATGTGTCACATACTTCAAAGACAATTCTAACTGGTAAAGTTAATTAACAGACCACAACTAATTTAACCAAAATGCAGTCAGGCAAAGTGAACAGAATAGAGAGAGCATTGTAATAAACACTTACCAAGCTTGGGTATGGAGTATTTCATGTCAAAGTACTGTTCAAAATAGTCAAAAATCACTTTAGTGACATTTGCTGCATAATAAGCAGTGTGGATCTGTGAGGGCTGAGCATAGATCCTCAGCTGCAGGTTGAGAGGGGAGAATAAGCAGAGTCTAAGTTAAAGCTTTCCTTCTAATCTACAGCAGAAACATGCATTTAAACAAACACGCTTGGGGAAAATAACTTACTGGAATTCCACTTTCAGAAATCCGCTCAACAAACTCAAAACGATGCACAGCAAAACACACTAAGTAGGTGCTCATCTTGACTGATTTCATAAAAATGGTTTTGACCTTCCCATCAGGAAGGGTCTCTGTTTTCCACTGGCATGTTGGACATTGCTTGGTAGAGCACGTCGTGGGTGATGGAGATGTTGTACGTGGCTTTTTTGTTTGGCTCATCAAAGCAGGGGAAAGATTTACGAGCGTCAGTGGGCTCGTGGTCTGTGGCTGCAATTTTTCTGTCTCTCCTCCCTCCTGGTAGGTTGTCTTGTAGAATCCGACCAGCGAGCCATTGAGCCATCCCTGGAAGTGCAGTGTGAGGGTGTAGTACTCATAAAAATCTGTGGCCTTCAGCTGCTCTGTGGCCTCCACCACCAAATACTCCTGCGGGGTGTATTCAAAGCATCCTTTCACTTCAACAACACGGCTGAATCCATCAAACTCATTGATAGTAAGGGTAGGCACAGCTGTGACGAAGGTCTCTCGGATGTGGAGCCAAATGTGTGTGCTGGGCTTGGTCAGGGTGAACTGAATGGACACTCTGCCAGTGTAGGTGTCCTCGACCATGTCAGGCTCCATGTGCAGGTCATAGTGGAATGGGATGATGTGGTCAGGCAGGCGAAAGTTGGTCCAGTCACCGTTGGTGCTGGTGGAGGGTTTGCAGGGACCCCTATCAGGAGATGTCGTGGGTGTTGGAGTGGTTGTTGATGTGGTTGCTGTCGTCGGGGTCTCCTCGTCTGAGTTGTTCAGGCTCAGGCCCACCCCAAGCCCCACAGCAACACCAGTTACTATGATGACCACACAGATGATAACAGCATGCTTGCCCCGGATACAGTAGcgcttctctttcttctctagGTCAAAACTTTCCATGATGAACAGTCAgaagctctcacacacacatacaaactacCTCCCTTATCTGACTCTTCCAAATACAGCTATACACTCTATAGGAGCACACACTATACCAATAATACCCCTACTATACTTCTTTATTCCTCCCAAGAGAAAACAGCAGCTGCAAATAGATGTTTCAGAGCTGTCCACACTCAAACTCACACTCATTCACCAAAGTCCACCTTCTGTAATTGCATATCACTGCAAAATGGCTCAAAAGTAGTATTATTAACaactaaaaatacatttcagtatTTGCAAACCCAGTTTAGAGGAGTCCGAAACGTCCAATCACAGGAAATCCACTGGTTGATGTTAAGACTAATCTGAGGATTAGTCTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU297366 lncRNA upstream 1525 25204034 ~ 25208010 (+) True G219153
TU297362 lncRNA upstream 11259 25194787 ~ 25198276 (+) True G219151
TU297359 lncRNA upstream 15300 25192908 ~ 25194235 (+) True G219150
TU297353 lncRNA upstream 21857 25178653 ~ 25187678 (+) True G219144
TU297352 lncRNA upstream 27552 25181445 ~ 25181983 (+) False G219144
TU297372 lncRNA downstream 1911 25217719 ~ 25218017 (+) True G219155
TU297379 lncRNA downstream 28321 25244129 ~ 25245994 (+) True G219162
TU297385 lncRNA downstream 36477 25252285 ~ 25252509 (+) True G219167
TU297393 lncRNA downstream 48298 25264106 ~ 25268474 (+) True G219173
XR_002651948.1 lncRNA downstream 173284 25389092 ~ 25389979 (+) True LOC111196010
XM_022684918.1 mRNA upstream 17156 25184634 ~ 25192379 (+) True rrh
XM_022684917.1 mRNA upstream 34827 25161727 ~ 25174708 (+) True dapp1
XM_015602442.2 mRNA upstream 410936 24794890 ~ 24798599 (+) True ap5s1
XM_007237253.3 mRNA upstream 410936 24795057 ~ 24798599 (+) False ap5s1
XM_007237254.3 mRNA upstream 422195 24779609 ~ 24787340 (+) True cdc25b
XM_007237999.3 mRNA downstream 10633 25226441 ~ 25241001 (+) True metap1
XM_007238000.3 mRNA downstream 10633 25226441 ~ 25241001 (+) False metap1
XM_007237991.3 mRNA downstream 95035 25310843 ~ 25315607 (+) True LOC103043156
XM_022684920.1 mRNA downstream 96525 25312333 ~ 25315607 (+) False LOC103043156
XM_022684924.1 mRNA downstream 124656 25340464 ~ 25403594 (+) True LOC103042335
TU297354 other upstream 37292 25161942 ~ 25172243 (+) False dapp1
TU297241 other upstream 367002 24842302 ~ 24842533 (+) True G219050
TU296854 other upstream 1145747 24059211 ~ 24063788 (+) True G218758
TU296687 other upstream 1501292 23696577 ~ 23708243 (+) True G218651
TU296281 other upstream 2990675 22218117 ~ 22218860 (+) False G218351
TU297390 other downstream 41142 25256950 ~ 25302587 (+) True G219171
XR_002651962.1 other downstream 2009484 27225292 ~ 27236611 (+) False LOC111196018
XR_002651965.1 other downstream 2014349 27230157 ~ 27236611 (+) False LOC111196018
XR_002651959.1 other downstream 2014351 27230159 ~ 27236611 (+) False LOC111196018
XR_002651961.1 other downstream 2014352 27230160 ~ 27236611 (+) False LOC111196018

Expression Profile