RNA id: TU297390


Basic Information

Item Value
RNA id TU297390
length 1385
RNA type TUCP
GC content 0.42
exon number 2
gene id G219171
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 25256950 ~ 25302587 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctttaaaaaaacaAGGTTTTGATATCATAGtgataaaatatgtatacagCAAATTAGGACTTATAAATAGatttttgcaaggcactgtataagTTTACTAGGAATGCACACTCATATCGGAATCTGCAAATCATTTCTTCAAgtacactgatcaagcataatATTACGGCCACCTTCTTTATGTTTCTATACCCATTACACATTTGTCGTAGTACATTGTAGTTCTGTGATTAAAGACTGTAGTCATGTGGCCACTGATGAAGAACTGGAGGATGAcgcaacacaaactgtgcagcaacaaatCACAGAGCTACTGTTTCTGACTTTAATTTCCCTATAAGATGGAGCAGCTACAgcaggtaggagtgtctaatagaatggaggacagtgagagaacatagtgtttaaaaactccagcagcactgctgtgtctgatccactcgctctgtggtggtctttcctgtgaggtcctgaccattgaagaacagaatgaaaggaggataataataaagtatgcaggtAAGGAGATACTGGACTACAGTCTTTAATTAAAGAACTACAAATGGTTCCTATATGCtactcagtggagctgaaaatggataatgggtgtagaaacaaataTATGGTAATAATACTAGGCTTGATCAATGTATAACTAGATGGTTATTTACATAGCTACATTTGGTCTATATTTCCAACGGATATTGAATAATACATTCATTCTATTCAACAGCAAACCTGCATTTTATTCACCCACATTTCTAAGCCTGTAGTTTTAAAATATCCATTATGATTTGGTACCAATTGCTACATTCTGTGAATATGAAATCATCTGTACTGACAGTTGCGTGCACTAATTGCTATCACATTTCAGCTATGGCCCACAATTCCGatatcagtgcatccctaatggATATGTAGTCATTTGAGACTGGCAAAGGGCAAATGCCCAAAAACATCATTCACGATAATGCTCTCTCTACAGACATTCATTAAGCTGATCTGTGTCAGGGCAGAGCCAGAGAGCTACCATTTCTCTCCTTTGCCACAAAGCTGGCACTTGTTCATCTGTCCTTTATCATGCCTGTCCCGCATAGGCCTTCTACTTCTGAATGTAGATGATGACAATGCACAGAGTTCCCACAAGGCCAAGGGCCTGGATGCCAAGGAACCAGAGGAGAGCCCAAAACAGCAGGACCACCACAGGCTCTACTATCTTCTCCCCAAAGTAGAGCTGAGTGAAGCCGATGCCTCGCAGACACTTATTCAGCTCTCCAAAGAGAGTGCCCAGCCTCTCGCAGTCGTCCACCTGCGCTGCATCTGGGGCAGGAGCTGCTGAAGCTTGAGGCTCCGGTTCACGGTTGGAGTGGCCTGGGGGTCGCGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU297385 lncRNA upstream 4441 25252285 ~ 25252509 (+) True G219167
TU297379 lncRNA upstream 10956 25244129 ~ 25245994 (+) True G219162
TU297372 lncRNA upstream 38933 25217719 ~ 25218017 (+) True G219155
TU297369 lncRNA upstream 41142 25209535 ~ 25215808 (+) True G219154
TU297371 lncRNA upstream 41142 25209535 ~ 25215808 (+) False G219154
XR_002651948.1 lncRNA downstream 86505 25389092 ~ 25389979 (+) True LOC111196010
XR_002651947.1 lncRNA downstream 93213 25395800 ~ 25397172 (+) True LOC111196009
TU297497 lncRNA downstream 136148 25438735 ~ 25442581 (+) False LOC103047652
TU297507 lncRNA downstream 142684 25445271 ~ 25445499 (+) True G219271
TU297544 lncRNA downstream 329889 25632476 ~ 25692517 (+) True G219282
XM_007237999.3 mRNA upstream 15949 25226441 ~ 25241001 (+) True metap1
XM_007238000.3 mRNA upstream 15949 25226441 ~ 25241001 (+) False metap1
XM_022684918.1 mRNA upstream 64571 25184634 ~ 25192379 (+) True rrh
XM_022684917.1 mRNA upstream 82242 25161727 ~ 25174708 (+) True dapp1
XM_015602442.2 mRNA upstream 458351 24794890 ~ 24798599 (+) True ap5s1
XM_007237991.3 mRNA downstream 8256 25310843 ~ 25315607 (+) True LOC103043156
XM_022684920.1 mRNA downstream 9746 25312333 ~ 25315607 (+) False LOC103043156
XM_022684924.1 mRNA downstream 37877 25340464 ~ 25403594 (+) True LOC103042335
XM_022684923.1 mRNA downstream 37877 25340464 ~ 25403594 (+) False LOC103042335
XM_007237988.3 mRNA downstream 37877 25340464 ~ 25403594 (+) False LOC103042335
TU297354 other upstream 84707 25161942 ~ 25172243 (+) False dapp1
TU297241 other upstream 414417 24842302 ~ 24842533 (+) True G219050
TU296854 other upstream 1193162 24059211 ~ 24063788 (+) True G218758
TU296687 other upstream 1548707 23696577 ~ 23708243 (+) True G218651
TU296278 other upstream 3038090 22217299 ~ 22218860 (+) True G218351
XR_002651962.1 other downstream 1922705 27225292 ~ 27236611 (+) False LOC111196018
XR_002651965.1 other downstream 1927570 27230157 ~ 27236611 (+) False LOC111196018
XR_002651959.1 other downstream 1927572 27230159 ~ 27236611 (+) False LOC111196018
XR_002651961.1 other downstream 1927573 27230160 ~ 27236611 (+) False LOC111196018
XR_002651960.1 other downstream 1927573 27230160 ~ 27236611 (+) False LOC111196018

Expression Profile