RNA id: TU297497


Basic Information

Item Value
RNA id TU297497
length 667
lncRNA type sense_over
GC content 0.43
exon number 6
gene id LOC103047652
representative False

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 25438719 ~ 25442581 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACAGACCTCCGTCAATCAAAGATCACTTTCACCGACCCTGAATCAGGACAACAGCAGAAAGTTGTTCCTTATAAAGTGCAATCAGGCCATACCAGCTGCCAGGTGAAGAATGCCACGAAAGAAGAAACAAAAAGTTGGAGATCTCATAGAAGTCTTCCGCCCAGGATATCAGCACTGGGCCATATATGTTGGAGATGGCTATGTCATTCACCTTGCACCCCCATCTGAGACGGCGGGTGCTGGCTCCAGCAGTTTGATGTCAGTGCTGTATGATTCTACAGAGTCAACAACCTCTTGGATGATGAGTATGAGCCAAGAGACACCAATCTGCTTCTCAAAAAAGCTCACAGTCTTGTAGGCCAAACGCTGCCTTTCAGCGTTTTCAGCAGGAACTGTGAGCACTTTGTCACAGACTTGAGATATGGGAAGTCAACGTCAAGCCAGgtaaCAACAGCGGTTATTGGTGGCCTAGCTGTTCTTGGAGTTGGTTTGCTGGCCCTAACAACAGGACTGTTTTctaaatctgaaaaaagaagcaaaacaaATTCTGTTCATTTCTTTGACTGATTAAATGtgctgtaaaacattttatatgcccatgaatgaatgaataaatacagtCCAACAGAAATGAAGGGCTATGTGAAATAAATTAAGCAGTAGAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002651947.1 lncRNA upstream 41563 25395800 ~ 25397172 (+) True LOC111196009
XR_002651948.1 lncRNA upstream 48756 25389092 ~ 25389979 (+) True LOC111196010
TU297393 lncRNA upstream 170261 25264106 ~ 25268474 (+) True G219173
TU297385 lncRNA upstream 186226 25252285 ~ 25252509 (+) True G219167
TU297379 lncRNA upstream 192741 25244129 ~ 25245994 (+) True G219162
TU297507 lncRNA downstream 2690 25445271 ~ 25445499 (+) True G219271
TU297544 lncRNA downstream 189895 25632476 ~ 25692517 (+) True G219282
TU297550 lncRNA downstream 304650 25747231 ~ 25807019 (+) True G219286
TU297668 lncRNA downstream 458062 25900643 ~ 25900869 (+) True G219367
TU297675 lncRNA downstream 504428 25947009 ~ 25947344 (+) True G219374
XM_007237985.3 mRNA upstream 1463 25431246 ~ 25437272 (+) True LOC103041526
XM_007237987.3 mRNA upstream 8176 25417380 ~ 25430559 (+) True c25h9orf72
XM_007237989.3 mRNA upstream 31872 25340471 ~ 25406863 (+) False LOC103042335
XM_022684924.1 mRNA upstream 35141 25340464 ~ 25403594 (+) True LOC103042335
XM_022684923.1 mRNA upstream 35141 25340464 ~ 25403594 (+) False LOC103042335
XM_022684925.1 mRNA downstream 91010 25533591 ~ 25612184 (+) True kiaa1109
XM_007230897.3 mRNA downstream 199972 25642553 ~ 25684011 (+) True letm1
XM_022684927.1 mRNA downstream 199972 25642553 ~ 25684011 (+) False letm1
XM_022684928.1 mRNA downstream 199972 25642553 ~ 25684011 (+) False letm1
XM_007230901.3 mRNA downstream 199972 25642553 ~ 25684011 (+) False letm1
TU297390 other upstream 136148 25256950 ~ 25302587 (+) True G219171
TU297354 other upstream 266492 25161942 ~ 25172243 (+) False dapp1
TU297241 other upstream 596202 24842302 ~ 24842533 (+) True G219050
TU296854 other upstream 1374947 24059211 ~ 24063788 (+) True G218758
TU296687 other upstream 1730492 23696577 ~ 23708243 (+) True G218651
XR_002651962.1 other downstream 1782711 27225292 ~ 27236611 (+) False LOC111196018
XR_002651965.1 other downstream 1787576 27230157 ~ 27236611 (+) False LOC111196018
XR_002651959.1 other downstream 1787578 27230159 ~ 27236611 (+) False LOC111196018
XR_002651961.1 other downstream 1787579 27230160 ~ 27236611 (+) False LOC111196018
XR_002651960.1 other downstream 1787579 27230160 ~ 27236611 (+) False LOC111196018

Expression Profile