RNA id: TU297715


Basic Information

Item Value
RNA id TU297715
length 2567
lncRNA type intronic
GC content 0.37
exon number 2
gene id G219404
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 26202229 ~ 26204872 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CCATTTCTTCCCTTTTTGACTTTTCgaaataatttaaatgagttgtttttttactttttttaacaaaatgccATGCTCACAAATCACTCGgattaaaatctgtttaaatagaAAGTCAAGAAGGTTTCCGGTGCAGTTGCTAGTTTGGAACAAACATGTTTTCACAGGACAACCACAATTAactctattattattacaatatgtaATCCATAAATATGTAACCCTGAGTAAACACCCCTCAGGATAAAAATCCACTGTGATTATTATCACTGAACATGTTGCAGCTGGAAAACTTGAATATCTTGCTGAGCATTGCGCAACAATAtttgtgtcctttttttttttcgtctgaGAGGGAAGTGATGGATGTTTGCATATATCCTTTATTTCTGTCTCTGAGGCCGCTTTGCAGTTGCACAGAAATTAAGTGCTTGAGTCTGCTCTCGAGGTCCATTTACACATTCAGATCAAATCTAAGAGCAGTATTTGCATCATCCGTTTGGTTTGTTCTCATCTTTTAATttagaagaagcttattaaggACAAATTGTGGAGAAACATTTTTTgatataaatgtgttaatttcTGCATGAATACAGTAAATCCACAAGCTTTGAATGTGATCATTGAGAGATACGGTGGTACATGCAGGCAGGGGAAGAGTGGAGAAGTGACAGCGAGAAAGAAAGCAATTGCCGAGTGGGAAGAGAGAGTCCCCGCCGTCCTCGGTCCTCGGTGTCTGGGGACAGGGAAGTGTGGCGCAGAGCGAGGTTCCACACGTGAGGATTAACACCCCTCTACTCCTCTACAGCTTTCCATAGAGAATAATAGAGGGAAAGGATTAGTGAATATATGAATAGATGAATGGACAGATATGAGGCTGATAGCCACAGCCACAACCAGAGCAGAGACCAGTAGAAGCCAGCCATGTGTGAATAAATGAAGACTTTTAGTGACGCTACGTGTTCAGAGACACAGCTTTGGAATATTAAGTGGTGACAGTGCTTTTTATTTGATACAGTCATTTGAGTCACGTAACCTGATGTGCAGTGATCACATgatacagagattttttttctctcatgatCAAGATATTTGTTGAGATTTCTTTATCACCATCTTGCTTATATTACAACTTtagcacacacagacacatgttTATGTAACATAAAGATGTCACATAAGCACTCAAATCTCAAAACgtcatcaaaaaaataaaccaatcccCAAAATGTGTAAAGATTCAGCATATTATGCAAGactgctgtattatttattaatttgtacaattttaaagtaaaaaacaaacaacttaaacttaacctacacataaaacttaatttaacaTACACCTCTATCCAAACCTAATCTTAATCTCAACCTAAAcgtaacctacacctcaatctactCATAAACCTAAATTTAACATATACCTCCATCCAAACCTATTCTTAATCtcaacctaaatttaacctacacctcaatctactCATAAACATAAATTTAACATACACCTCTATCCAAACCTATTCTTAGTCTTAGTCTTAATCTGAACCTaatcctaaacttaacctacacctcaatctacaACTAAACCATAACTTACCATACACCTCCATCCAAACCTATAGTcgcaacctaaacttaacctacacttgACCCTAAACTTAACATACACCTCCATCCAAACCTAAACtgaacctacacctcaaccaaAACCTAAAGGTAACATATATCGAAACCTAAACATTTTTAGACCTATATATTTACCCTAAACATTCTGGAAATTAAAACAACTGATATCCATAacttacaaaatatatttgtaatagacAAGGATGATATACAGTCAacacatatcacaatacaatacaacaaacaCTGTCAAGAAGCGGCGAGAAATAGAAACAACTGCCCACCGAGGGGGAGGTCCTCCAACCACCATGGAGGATGAAGGATGAGGTTAGGCCCTGCGGTTAGGACATGGGTGGAGGCTTGAACCCAAGGCCACAACACAGAGTGGCAAAGGTGCTAACCACCAATCACCATGCCACCCACAGGACTAGAAGACCATAGGAAGAAGCATAATGTAGTTATGTTACAGTTACAAATACAGTTTTGACTGTAAGTGTGGTGCACAGTTTTACTTCACACAAAAATGGGTCATCCTGGTCTTTATCATCAAGTTTAGcatctaaatattaaaaatctacGTCTACATGGGCTTGTTTTGCAGCCAGTGGCACTGGGAATAGAACTTTCGTTGGTGGAGGAAGAATGACCTGtgatagaagaagaagaatcatTGATGAGGAAGACAAAtctcatatataaaatatgaaagctTAAATTATGATATGATTTGAAAATATGCTTAAATTGGTCTTACAGCAGGACAGTGATCCTAAACACACAACATAATACACAGTGGCTTTCCTCAAGAAATacacagtgtttttgttttctcagcGCTTCACAGTTTCATGACCTAAACATCAGAGAAAATCTGTTGATAGCCCTTAAAAGAGCAGTTGCTGCAAAACAGCCAGAGAATCTTACAGAAGTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU297675 lncRNA upstream 254885 25947009 ~ 25947344 (+) True G219374
TU297668 lncRNA upstream 301360 25900643 ~ 25900869 (+) True G219367
TU297550 lncRNA upstream 395210 25747231 ~ 25807019 (+) True G219286
TU297544 lncRNA upstream 509712 25632476 ~ 25692517 (+) True G219282
TU297507 lncRNA upstream 756730 25445271 ~ 25445499 (+) True G219271
TU297737 lncRNA downstream 182041 26386913 ~ 26387761 (+) True G219416
TU297729 lncRNA downstream 257836 26462708 ~ 26474262 (+) True G219410
TU297725 lncRNA downstream 267757 26472629 ~ 26474304 (+) False G219410
TU297754 lncRNA downstream 458549 26663421 ~ 26663641 (+) True G219432
TU297755 lncRNA downstream 463179 26668051 ~ 26684245 (+) True G219433
XM_007230884.2 mRNA upstream 76617 26089983 ~ 26125612 (+) True c25h20orf194
XM_007230888.2 mRNA upstream 116079 26080829 ~ 26086150 (+) True LOC103044529
XM_007230887.2 mRNA upstream 116079 26080873 ~ 26086150 (+) False LOC103044529
XM_007230911.3 mRNA upstream 183677 26014323 ~ 26018552 (+) True LOC103023829
XM_007230897.3 mRNA upstream 518218 25642553 ~ 25684011 (+) True letm1
XM_007230877.3 mRNA downstream 68967 26273839 ~ 26284115 (+) True LOC103042087
XM_022684933.1 mRNA downstream 80905 26285777 ~ 26331700 (+) True eif2ak3
XM_022684934.1 mRNA downstream 130728 26335600 ~ 26469671 (+) True atrn
XM_007234673.3 mRNA downstream 487281 26692153 ~ 26720305 (+) True adss
XM_007234678.3 mRNA downstream 622476 26827348 ~ 26977774 (+) True LOC103024575
TU297390 other upstream 899642 25256950 ~ 25302587 (+) True G219171
TU297354 other upstream 1029986 25161942 ~ 25172243 (+) False dapp1
TU297241 other upstream 1359696 24842302 ~ 24842533 (+) True G219050
TU296854 other upstream 2138441 24059211 ~ 24063788 (+) True G218758
TU296687 other upstream 2493986 23696577 ~ 23708243 (+) True G218651
XR_002651962.1 other downstream 1020420 27225292 ~ 27236611 (+) False LOC111196018
XR_002651965.1 other downstream 1025285 27230157 ~ 27236611 (+) False LOC111196018
XR_002651959.1 other downstream 1025287 27230159 ~ 27236611 (+) False LOC111196018
XR_002651961.1 other downstream 1025288 27230160 ~ 27236611 (+) False LOC111196018
XR_002651960.1 other downstream 1025288 27230160 ~ 27236611 (+) False LOC111196018

Expression Profile