RNA id: TU297725


Basic Information

Item Value
RNA id TU297725
length 1635
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G219410
representative False

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 26462708 ~ 26474304 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTTTCAATGGACAGCAgctatatttgtttgtatttttatggGGTTAAAATGGGATCGTTAGCCCTATCAGGACAGGATTAGTAATTagtttagtgataaaactcttgcgtTCAAACTCcaattgaagtttttttttatttctcggtcacatgacatcgcgttcagtagctcctccatttccactcactgttgtgtttacatggatctccatggaaatgcGTGCCCATGCccgtgcgtggcagtggacaaatagctattttatgaaACGTGAGGTGACGACGGGGTTCAGTAGATAACAGTAGATAagtcagcctgtaattttctcagaggacgtcttaGGAAAACATACATgcggtaaaatcaaagaggatcccccataaaagagaaaattagaaaaaataatccCATCTGAATGGGGCTTAAAAtaatcttttgttatttttgataCAGTTCATGCACATTCCAGTTTGAAGCATTGTATAGTTTTGGTAATGTTGTAAAGTCAATGCCTGCGTATAAACCCTCACTTTTCTTTTTCATGTAACGTTTTTCCATCTCAGTATATTCTACCCTGCTACTCCATTTAGACCCACAAACACACCGTGCAAAAGTATAGCTTTCCatcctccatttttttttctttcgttcCATATGGGTTTCATTCCCACAGTCACGGTGAGGTTTACAGTATATCATGTTCATAGTGTGCCAAGCTTTATGGGTAGAATTGAGATTGGGTTTATGTGTCTGCCGTTGCCCGCCTGTCAGTTTCCCTGTGATAGGAGCTGTATGAGCCATGATTGAGGTGACACAGAGCATTCACAAACATCACAGTGCATTCCGTCAGAGCTCTCGCCACCGAACGAGACCCACCGCAGCTAAATCACACCGGGGTCCAGAGTGATGTGTGATTACGGCGGGAAATTGCCTTTCAGGTTTATGGATCAAATGTGAAGCTACATTAAAACCGGGAGAAGTAGCACCAACAGCACGGCAGCTACCGACGACGGCCCGAGTGAGAATCCGCCCTTTTCAGCTGCAGCTGCTCAGTAGGAGGCACTACGCCATGAGATATGAAGAGCactacagtaacacacacactcacacatacacaccaacaTGGGGTGGAGCACCGTTATCCAAGGAGCTGGTCTCTTAGTGTGGACGCCAATTGAAAACGAATGTTCATTTACGTTTCAAAAGCCTCAAACAGAACTCCTCCTCCCTCATCGTACACCCGCACCCCGTCCCCGGCATCACTTCTCTGTACAGCGATCACTGTAGATACTGAGATCTGTAGTTTGTTAATATGTATAATGTAGCTGCAGAtgcgctcttttttttttgtacataatgATGGACAGTAATGTGAATGCCCTTTCTGTTTCTGAATGACTTGCTTGGCAGGTGCAGCGTCCCCAGGCTTTTACAGTGGGAGCTCACCGCAGTTTCTTTTTGTATGTAACATGGGGAATGTCACCACAAACAAACCTTAAATTAAGCACAACTGAGATGtgtgaaaaaagaagaagaaaaaaattacgGTCTCTCGAGAATTATAACTGAAGTTGTAATTATATGTGTACATAAAGAATGATATAGAACTTTTTGTCTATAATTAAATGTTGAAACTAa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU297737 lncRNA upstream 84868 26386913 ~ 26387761 (+) True G219416
TU297715 lncRNA upstream 267757 26202229 ~ 26204872 (+) True G219404
TU297675 lncRNA upstream 525285 25947009 ~ 25947344 (+) True G219374
TU297668 lncRNA upstream 571760 25900643 ~ 25900869 (+) True G219367
TU297550 lncRNA upstream 665610 25747231 ~ 25807019 (+) True G219286
TU297754 lncRNA downstream 189117 26663421 ~ 26663641 (+) True G219432
TU297755 lncRNA downstream 193747 26668051 ~ 26684245 (+) True G219433
TU297757 lncRNA downstream 193747 26668051 ~ 26684245 (+) False G219433
XR_002651957.1 lncRNA downstream 321939 26796243 ~ 26799752 (+) True LOC111196015
TU297940 lncRNA downstream 324293 26798597 ~ 26798846 (+) True G219567
XM_022684934.1 mRNA upstream 2958 26335600 ~ 26469671 (+) True atrn
XM_022684933.1 mRNA upstream 140929 26285777 ~ 26331700 (+) True eif2ak3
XM_007230877.3 mRNA upstream 188514 26273839 ~ 26284115 (+) True LOC103042087
XM_022684932.1 mRNA upstream 202934 26143357 ~ 26269695 (+) True slc4a11
XM_007230884.2 mRNA upstream 347017 26089983 ~ 26125612 (+) True c25h20orf194
XM_007234673.3 mRNA downstream 217849 26692153 ~ 26720305 (+) True adss
XM_007234678.3 mRNA downstream 353044 26827348 ~ 26977774 (+) True LOC103024575
XM_022684946.1 mRNA downstream 619794 27094098 ~ 27181917 (+) True cep170
XM_015601678.2 mRNA downstream 619794 27094098 ~ 27181917 (+) False cep170
XM_022684947.1 mRNA downstream 619795 27094099 ~ 27181917 (+) False cep170
TU297390 other upstream 1170042 25256950 ~ 25302587 (+) True G219171
TU297354 other upstream 1300386 25161942 ~ 25172243 (+) False dapp1
TU297241 other upstream 1630096 24842302 ~ 24842533 (+) True G219050
TU296854 other upstream 2408841 24059211 ~ 24063788 (+) True G218758
TU296687 other upstream 2764386 23696577 ~ 23708243 (+) True G218651
XR_002651962.1 other downstream 750988 27225292 ~ 27236611 (+) False LOC111196018
XR_002651965.1 other downstream 755853 27230157 ~ 27236611 (+) False LOC111196018
XR_002651959.1 other downstream 755855 27230159 ~ 27236611 (+) False LOC111196018
XR_002651961.1 other downstream 755856 27230160 ~ 27236611 (+) False LOC111196018
XR_002651960.1 other downstream 755856 27230160 ~ 27236611 (+) False LOC111196018

Expression Profile