RNA id: TU297729


Basic Information

Item Value
RNA id TU297729
length 3013
lncRNA type sense_over
GC content 0.40
exon number 3
gene id G219410
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 26462708 ~ 26474304 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cacacacactcacacacacacagttcccaGATACAGTTCTTCTCTGAGGTTGTAATTGAATTTTAAGAGGTGTTTCTTCTTTTACTGTCACCCCCTGaatttgaagtgtgtgtgtgtgttgtgtgtgtgtgtgtgtgtgtgtattagatgTTGTGATTATTACGGTTAAGAGAGAATGTTTTAGAACAGGAGGAAAAGGTCAGATTGGaaaacatgacattttggaaTCTGATGCAGGCAGGAGGAAATATAAAATCACATTTAGCTCATGCCTGTAAATTAAAttagtatgtgtgtatgtgtaagtatTTTATAGTCACTGTCAgacaaactttatttttatacacactcattttattttattttttttctttaaatttgtatcccattttctcctcaatttatatatattacccaacacactcattaggatgccccaacaccagaagggccaagactagcacatgcctcctctgatacatgtgaagtcagccactgcttcttttcccactgctgctgatgcagcattgctgagtagcatcacagcgcactcggaggaaagcgcagcaataGTTTCACACTAACTTCAATCGAAAGTTCAGAAGATCCTTTCTGTCCTGTAATACTGAAATGTATGAGATATAAGGTTTCTGCGActtcttatttgtttttatttctagcAGGACATGTTTTGCGTGGTTTAGGCAAGGGGCGGGGCCTCTGTAGTGTGTGCGGCAGGCACAACATGGCGCTAAAAGAACTTTGTGGTCATATTATCTTCTAGGGACACAGTGAATCATACACATGGGCTCATTCCAGCATTATAGATTTAGTACTAGAGGACTGGAAGTCTAATAACGTCTGGGTAATGTCCTGTACAACATATGTAATTTATGTATTCACACATTCAGCTCCTCCAGTTAATGTTTGGAGAAGCTCTGGATTAATATGCATGTGTGAAAGAGTTTACACTCCTAAAGAACCAAAGCTAAAAACAGATTAACACTACAGTAAGCGTACAGtacaaaataaagatttttttcaagCAATGCTAAGGAAATGCCAATGAAATCAGAGTGCAAAGAACTTGGCAGTTCTTTAAGAGAAACTTTGCATcaagtttttaaagtttttttttttttttttatctttaaaaggTTTTTCGGTCTCACTTATCTTTTTAAACACGTATaccgttgctgtccaatgaaaaacatgcatcttTCAAATGGGATGTTTGCAGCAGAAGTGACAAATGTTCCTGCCTAACTTTAAATTGAAATTAGTGTAAAATTGTAAGcaattttagagtatttttattggtctgttcatacataattatatacatactgtatagaGCAGTTACACAGTTCAAATGATggacaaacataaaaaaaacagacaaaaatatatgaCATGTTTTTCAATGGACAGCAgctatatttgtttgtatttttatggGGTTAAAATGGGATCGTTAGCCCTATCAGGACAGGATTAGTAATTagtttagtgataaaactcttgcgtTCAAACTCcaattgaagtttttttttatttctcggtcacatgacatcgcgttcagtagctcctccatttccactcactgttgtgtttacatggatctccatggaaatgcGTGCCCATGCccgtgcgtggcagtggacaaatagctattttatgaaACGTGAGGTGACGACGGGGTTCAGTAGATAACAGTAGATAagtcagcctgtaattttctcagaggacgtcttaGGAAAACATACATgcggtaaaatcaaagaggatcccccataaaagagaaaattagaaaaaataatccCATCTGAATGGGGCTTAAAAtaatcttttgttatttttgataCAGTTCATGCACATTCCAGTTTGAAGCATTGTATAGTTTTGGTAATGTTGTAAAGTCAATGCCTGCGTATAAACCCTCACTTTTCTTTTTCATGTAACGTTTTTCCATCTCAGTATATTCTACCCTGCTACTCCATTTAGACCCACAAACACACCGTGCAAAAGTATAGCTTTCCatcctccatttttttttctttcgttcCATATGGGTTTCATTCCCACAGTCACGGTGAGGTTTACAGTATATCATGTTCATAGTGTGCCAAGCTTTATGGGTAGAATTGAGATTGGGTTTATGTGTCTGCCGTTGCCCGCCTGTCAGTTTCCCTGTGATAGGAGCTGTATGAGCCATGATTGAGGTGACACAGAGCATTCACAAACATCACAGTGCATTCCGTCAGAGCTCTCGCCACCGAACGAGACCCACCGCAGCTAAATCACACCGGGGTCCAGAGTGATGTGTGATTACGGCGGGAAATTGCCTTTCAGGTTTATGGATCAAATGTGAAGCTACATTAAAACCGGGAGAAGTAGCACCAACAGCACGGCAGCTACCGACGACGGCCCGAGTGAGAATCCGCCCTTTTCAGCTGCAGCTGCTCAGTAGGAGGCACTACGCCATGAGATATGAAGAGCactacagtaacacacacactcacacatacacaccaacaTGGGGTGGAGCACCGTTATCCAAGGAGCTGGTCTCTTAGTGTGGACGCCAATTGAAAACGAATGTTCATTTACGTTTCAAAAGCCTCAAACAGAACTCCTCCTCCCTCATCGTACACCCGCACCCCGTCCCCGGCATCACTTCTCTGTACAGCGATCACTGTAGATACTGAGATCTGTAGTTTGTTAATATGTATAATGTAGCTGCAGAtgcgctcttttttttttgtacataatgATGGACAGTAATGTGAATGCCCTTTCTGTTTCTGAATGACTTGCTTGGCAGGTGCAGCGTCCCCAGGCTTTTACAGTGGGAGCTCACCGCAGTTTCTTTTTGTATGTAACATGGGGAATGTCACCACAAACAAACCTTAAATTAAGCACAACTGAGATGtgtgaaaaaagaagaagaaaaaaattacgGTCTCTCGAGAATTATAACTGAAGTTGTAATTATATGTGTACATAAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU297737 lncRNA upstream 74947 26386913 ~ 26387761 (+) True G219416
TU297715 lncRNA upstream 257836 26202229 ~ 26204872 (+) True G219404
TU297675 lncRNA upstream 515364 25947009 ~ 25947344 (+) True G219374
TU297668 lncRNA upstream 561839 25900643 ~ 25900869 (+) True G219367
TU297550 lncRNA upstream 655689 25747231 ~ 25807019 (+) True G219286
TU297754 lncRNA downstream 189159 26663421 ~ 26663641 (+) True G219432
TU297755 lncRNA downstream 193789 26668051 ~ 26684245 (+) True G219433
TU297757 lncRNA downstream 193789 26668051 ~ 26684245 (+) False G219433
XR_002651957.1 lncRNA downstream 321981 26796243 ~ 26799752 (+) True LOC111196015
TU297940 lncRNA downstream 324335 26798597 ~ 26798846 (+) True G219567
XM_022684933.1 mRNA upstream 131008 26285777 ~ 26331700 (+) True eif2ak3
XM_007230877.3 mRNA upstream 178593 26273839 ~ 26284115 (+) True LOC103042087
XM_022684932.1 mRNA upstream 193013 26143357 ~ 26269695 (+) True slc4a11
XM_007230884.2 mRNA upstream 337096 26089983 ~ 26125612 (+) True c25h20orf194
XM_007230887.2 mRNA upstream 376558 26080873 ~ 26086150 (+) False LOC103044529
XM_007234673.3 mRNA downstream 217891 26692153 ~ 26720305 (+) True adss
XM_007234678.3 mRNA downstream 353086 26827348 ~ 26977774 (+) True LOC103024575
XM_022684946.1 mRNA downstream 619836 27094098 ~ 27181917 (+) True cep170
XM_015601678.2 mRNA downstream 619836 27094098 ~ 27181917 (+) False cep170
XM_022684947.1 mRNA downstream 619837 27094099 ~ 27181917 (+) False cep170
TU297390 other upstream 1160121 25256950 ~ 25302587 (+) True G219171
TU297354 other upstream 1290465 25161942 ~ 25172243 (+) False dapp1
TU297241 other upstream 1620175 24842302 ~ 24842533 (+) True G219050
TU296854 other upstream 2398920 24059211 ~ 24063788 (+) True G218758
TU296687 other upstream 2754465 23696577 ~ 23708243 (+) True G218651
XR_002651962.1 other downstream 751030 27225292 ~ 27236611 (+) False LOC111196018
XR_002651965.1 other downstream 755895 27230157 ~ 27236611 (+) False LOC111196018
XR_002651959.1 other downstream 755897 27230159 ~ 27236611 (+) False LOC111196018
XR_002651961.1 other downstream 755898 27230160 ~ 27236611 (+) False LOC111196018
XR_002651960.1 other downstream 755898 27230160 ~ 27236611 (+) False LOC111196018

Expression Profile