RNA id: TU297755


Basic Information

Item Value
RNA id TU297755
length 1377
lncRNA type inter_gene
GC content 0.48
exon number 6
gene id G219433
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 26668051 ~ 26684245 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAAGTAGGAGTTCCAGGATACGAAGGAGTCTGCAACTCACAGCAGACTGACAGGTAAACTGTAGAGAAAGAGTGCAGAGCTCTTTGAGCAAGTAACAGTAAAAATCTTTAGGCACAATCACCAAGGTGGGTAGACATGGGATGTGTGTCATTACAAAAGTGGGGTCGTTTCACCCAGGTGGCAGCCTTTCTGTaagaggaacacacacacatacatgatcAGGAACACAAagttgtaaacaaaagctccccCTGAACAAAAGATACACGAAGACTCTTTCTTCAGGGATGGAGGAAAGAAAGGCTTGTGAAATAATCCAGCGTTGCAAAAGCATTACAGTAACATTATCAAAAGAACAAAATTAAACTCAAGGTGTGTCAATGGGACCTTGTACAAAGTGTTTTTTCAGTCCTGAGtttccgaaaaaaaaaaaaacatcaaatgcCAAAAAGTTTCAACATGGTTTCAAAAACACTGGTAATACATCTctgagtgtttcggtaaagCAGTCCGATACTTCTCTGGgcccataataataataacaacaaaaaagaacaaaacacaaaaacaaccaaACCAATGATTTTGGACCCGTGACCAACTGGGCAGGGCATATCCACACTGCTGGTGAACTGCAGGTTTGTCACTGGAAGGGGTGGGCTCTGTTGGCAGCATTGGGCCAGTCTTTGAGGCCTGTCAGTCAAGGCAGCAGGGTCTATCGGCGTGGCTGGTGTCGGGTGGGCCTGGGCATTGGTGCGGGGGCCACGGCGCAGGAAGGCGTGGAGGCAGAGGCGGCGGCGTCTTCCGCTTCCTCCAGCTCCCCTTGCAGCTCCTGACTCACGCTGGACTGCAGCGCTGCCGGCGTCAGCCACTCTTTAGGCAGGCAGCTCTGCAGAAACGGCACACAGGAGCTGAAGTAGGCCAGTCTGTTCACCCAGCGCGGGATCTCACGACCACACAGGATCTCTGACAGTGCTGAGGAAAAGTGATTGCAGTTCTTGTGCATGAGGTGATACGCATTCCCCTTATACTCCTTTCCCAACTCCTCCATGATTCGCTCCACATCTTCTTCTGTGAAATCTGTGCTCCCTAAAACAATAGCTTCTTTGAATTTAAACGTCTCCCCGAGTTCTGTGGCATCACCAGGTGTTATCTCAAATATACCTGAAAACGGATACGGATGTCCCCCATACGCAAACTCTCTGCCATAAATCTCAATTCCTGAGTGAAAGACCCCAATACCCAGAGAGGTAGTGAACTCATTGATCCAGTACATGTCATACACGTTCAGAATAACAGGCTCGTTTGCCATTACAGGCTCCACTCCTGTCCTCAACCCCGTCTCCTCCTCCGATCAGCAAAGGCAGCTAGCCagct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU297754 lncRNA upstream 4410 26663421 ~ 26663641 (+) True G219432
TU297725 lncRNA upstream 193747 26472629 ~ 26474304 (+) False G219410
TU297729 lncRNA upstream 193789 26462708 ~ 26474262 (+) True G219410
TU297737 lncRNA upstream 280290 26386913 ~ 26387761 (+) True G219416
TU297715 lncRNA upstream 463179 26202229 ~ 26204872 (+) True G219404
XR_002651957.1 lncRNA downstream 111998 26796243 ~ 26799752 (+) True LOC111196015
TU297940 lncRNA downstream 114352 26798597 ~ 26798846 (+) True G219567
TU297944 lncRNA downstream 120903 26805148 ~ 26805498 (+) True G219571
TU297964 lncRNA downstream 190659 26874904 ~ 26875104 (+) True G219589
TU297965 lncRNA downstream 191085 26875330 ~ 26875714 (+) True G219590
XM_022684934.1 mRNA upstream 198380 26335600 ~ 26469671 (+) True atrn
XM_022684933.1 mRNA upstream 336351 26285777 ~ 26331700 (+) True eif2ak3
XM_007230877.3 mRNA upstream 383936 26273839 ~ 26284115 (+) True LOC103042087
XM_022684932.1 mRNA upstream 398356 26143357 ~ 26269695 (+) True slc4a11
XM_007230884.2 mRNA upstream 542439 26089983 ~ 26125612 (+) True c25h20orf194
XM_007234673.3 mRNA downstream 7908 26692153 ~ 26720305 (+) True adss
XM_007234678.3 mRNA downstream 143103 26827348 ~ 26977774 (+) True LOC103024575
XM_022684946.1 mRNA downstream 409853 27094098 ~ 27181917 (+) True cep170
XM_015601678.2 mRNA downstream 409853 27094098 ~ 27181917 (+) False cep170
XM_022684947.1 mRNA downstream 409854 27094099 ~ 27181917 (+) False cep170
TU297390 other upstream 1365464 25256950 ~ 25302587 (+) True G219171
TU297354 other upstream 1495808 25161942 ~ 25172243 (+) False dapp1
TU297241 other upstream 1825518 24842302 ~ 24842533 (+) True G219050
TU296854 other upstream 2604263 24059211 ~ 24063788 (+) True G218758
TU296687 other upstream 2959808 23696577 ~ 23708243 (+) True G218651
XR_002651962.1 other downstream 541047 27225292 ~ 27236611 (+) False LOC111196018
XR_002651965.1 other downstream 545912 27230157 ~ 27236611 (+) False LOC111196018
XR_002651959.1 other downstream 545914 27230159 ~ 27236611 (+) False LOC111196018
XR_002651961.1 other downstream 545915 27230160 ~ 27236611 (+) False LOC111196018
XR_002651960.1 other downstream 545915 27230160 ~ 27236611 (+) False LOC111196018

Expression Profile