RNA id: TU298007


Basic Information

Item Value
RNA id TU298007
length 796
lncRNA type sense_over
GC content 0.48
exon number 10
gene id LOC111196018
representative False

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 27200452 ~ 27236616 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTTTAGGTAAAGCAGATAATGAGGAAATGCAGTTAAGTTATGATGTCATTTTTGCTGGACAAACACCTGACAGTGCAGCAGGGTGGTGAGCTTCCTGAGGGCTTTGAGGATAGTTATCCTGGTGCGTGTCTTTCGTCTGGCCTCTCAGAAGAAAGATCTGGAGAAGGTCACTAGAAGAAAGGTATCTGAGAACAAAAGGCGGTAACAAAAAGGATGGATTTGATTTGGATCTCACCTATGTCACAGGCACTCTACAGAAATCCCATAAAAGAAGCTGCCATATTTCTGGACACAAAGCATCCCGATCATTACAGAGTTTACAATCTCTGCAGTCAAAAAGGCTACGATCCACTGTTCTTCCATTACAGAGTGCAACGAGTGATGATTGACGACCATAACGTACCGTCATTAGAccaacccactcgttaggactcccctatcactagtaatgccccaacacaccaggaggatgaagactagcacactctttctccgatacatgtgaagtcagccaccgcttcttttcgagctgctgctgatgcagcattgccaagcagccagcacatttggaggaaagcgcagcggcagccCGAGGAAcctgaggaaagtggtgggaaatctcgagCCAGTGACATGTTGAACTACACTGCCAGTTTGAGGGAATGTCATTGCCATCCACTGCAAAGGAGGCAAAGGTGTGGGAAAGGGCAATGGCAGTGATCTGAAGGTGCGGATCATAGTGAAAAGAGAGCAGGTGTTCCAGTGTGTCTGTGCCACGCAGACGAACTGTAGGGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU298027 lncRNA upstream 1863 27196695 ~ 27198589 (+) True G219630
TU298026 lncRNA upstream 2211 27196695 ~ 27198241 (+) False G219630
TU297997 lncRNA upstream 108276 27090463 ~ 27092176 (+) True G219618
TU297996 lncRNA upstream 111900 27086005 ~ 27088552 (+) True G219617
TU297934 lncRNA upstream 126917 26982620 ~ 27073535 (+) False G219565
TU298041 lncRNA downstream 25938 27262554 ~ 27263875 (+) True G219639
TU298012 lncRNA downstream 28151 27264767 ~ 27342438 (+) True G219620
TU298048 lncRNA downstream 58800 27295416 ~ 27304066 (+) True G219643
TU298058 lncRNA downstream 76092 27312708 ~ 27330208 (+) True G219651
TU298069 lncRNA downstream 137260 27373876 ~ 27408090 (+) True G219657
XM_022684947.1 mRNA upstream 18535 27094099 ~ 27181917 (+) False cep170
XM_007255765.3 mRNA downstream 45984 27282600 ~ 27293085 (+) True abcg8
XM_007255769.3 mRNA downstream 196246 27432862 ~ 27467984 (+) True ppm1b
XM_007255768.3 mRNA downstream 196246 27432862 ~ 27467984 (+) False ppm1b
XM_022684959.1 mRNA downstream 197317 27433933 ~ 27467984 (+) False ppm1b
XM_022684960.1 mRNA downstream 206605 27443221 ~ 27467984 (+) False ppm1b
TU297390 other upstream 1897865 25256950 ~ 25302587 (+) True G219171
TU297354 other upstream 2028209 25161942 ~ 25172243 (+) False dapp1
TU297241 other upstream 2357919 24842302 ~ 24842533 (+) True G219050
TU296854 other upstream 3136664 24059211 ~ 24063788 (+) True G218758
TU296687 other upstream 3492209 23696577 ~ 23708243 (+) True G218651
XR_002651967.1 other downstream 1254230 28490846 ~ 28549320 (+) False plekhh2
TU298587 other downstream 1482640 28719256 ~ 28720661 (+) True G220074
TU298732 other downstream 1904751 29141367 ~ 29142018 (+) True G220194
TU298921 other downstream 2551323 29787939 ~ 29793496 (+) True G220336
TU298923 other downstream 2551323 29787939 ~ 29793496 (+) False G220336

Expression Profile