RNA id: XM_022684956.1


Basic Information

Item Value
RNA id XM_022684956.1
length 1553
RNA type mRNA
GC content 0.44
exon number 8
gene id LOC111196018
representative False

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 27200452 ~ 27236616 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CACTGAGTGAACGAGAGCACCAGCCCTGATAACAGTTCAGTGAGTGACCGAATCACTGAGTGAACGAGAGCACCAGCCCTGATAACAGTTCAGTGAGTGAAGGAATCACTGAGCATTGAGCAAGTTTCCTCGCAATGAGAGTCTCCGCCACCAGATTCGCCGGTGATTCAGTGATTCACAGACCACACAGCAGTTCCCCTGCCGGCCTGTGGGGTCGCTGCTGAGCTTAACTACTGAACTGAGAAATTAACGAATCAGCTGGGGAAGTGATTGGATTCAGTTCGTTCACTCAAATGATTCGTTCATTCGAACGAATCGTTCATGAACGACACAACACTAATTTTTCGGCGTGGTTGCGGCCTACAGCAACCTGTGTTCTAAGTTAAGTCAATAAAGCGACTTAAACTGCCTACTCGGTCCTTCTTTCAGAGTCCAGGCGGACgctacaatatatttaaaacccCTTCAGTCCAGTaacagctgtgtttatttgttttttaaagtcaCTGGTTAGCACTGGTTGATCTCAGTTCATAATATTGCAGCAAATATCCAGCACAACAAACCCAGCTTTAAACCCAAACCATCGCTgtataaacagagacagaggagaagtTTTCTTTCAGAAACAGCGAGGGTTACCTGCGTGTTTACTAATCCGTTACTCGTTCGTGCTGGCGTTAAGATCATTTGCACGTTAGGTGGATTTACAGGGCTAACGTGTATTTATCTTATTAATCTTTAGTGATAGCAGGTAAAATCTTGGCAATGAAAGCTATATGAGTCTCGTGGCTCGAGTTTATGGGGCGTTTGGGGACAGTAGAACCAAAACAGCTTAGCTATGTAAGTTAGTTTGCTAACTTACGGAGCTACTTCATGACGCAGATTAGTCCATTCATCATTAAATTATCATACAGTGCAAAGAACAAATGCTGTGTTCAGATGATGTGGTAAACTATTCATCTACATGTTGTTCTTTCTTAGCTATTCATGTGATTTTCTCTATCATTAACAGGGTGGTGAGCTTCCTGAGGGCTTTGAGGATAGTTATCCTGGTGCGTGTCTTTCGTCTGGCCTCTCAGAAGAAAGATCTGGAGAAGGTCACTAGAAGAAAGGTATCTGAGAACAAAAGGCGGTAACAAAAAGGATGGATTTGATTTGGATCTCACCTATGTCACAGCAGGCACTCTACAGAAATCCCATAAAAGAAGCTGCCATATTTCTGGACACAAAGCATCCCGATCATTACAGAGTTTACAATCTCTGCAGTCAAAAAGGCTACGATCCACTGTTCTTCCATTACAGAGTGCAACGAGTGATGATTGACGACCATAACGTACCGTCATTAGAccCGAGGAAcctgaggaaagtggtgggaaatctcgagCCAGTGACATGTTGAACTACACTGCCAGTTTGAGGGAATGTCATTGCCATCCACTGCAAAGGAGGCAAAGGTGTGGGAAAGGGCAATGGCAGTGATCTGAAGGTGCGGATCATAGTGAAAAGAGAGCAGGTGTTCCAGTGTGTCTGTGCCACGCAGACGAACTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU298031 lncRNA upstream 11949 27211709 ~ 27218211 (+) True G219631
TU298030 lncRNA upstream 11949 27213356 ~ 27218211 (+) False G219631
TU298020 lncRNA upstream 18538 27187988 ~ 27211622 (+) True G219627
TU298027 lncRNA upstream 31571 27196695 ~ 27198589 (+) True G219630
TU298026 lncRNA upstream 31919 27196695 ~ 27198241 (+) False G219630
TU298041 lncRNA downstream 25943 27262554 ~ 27263875 (+) True G219639
TU298012 lncRNA downstream 28156 27264767 ~ 27342438 (+) True G219620
TU298048 lncRNA downstream 58805 27295416 ~ 27304066 (+) True G219643
TU298058 lncRNA downstream 76097 27312708 ~ 27330208 (+) True G219651
TU298069 lncRNA downstream 137265 27373876 ~ 27408090 (+) True G219657
XM_022684946.1 mRNA upstream 48243 27094098 ~ 27181917 (+) True cep170
XM_015601678.2 mRNA upstream 48243 27094098 ~ 27181917 (+) False cep170
XM_022684947.1 mRNA upstream 48243 27094099 ~ 27181917 (+) False cep170
XM_022684949.1 mRNA upstream 48243 27094099 ~ 27181917 (+) False cep170
XM_022684950.1 mRNA upstream 48243 27094099 ~ 27181917 (+) False cep170
XM_007255765.3 mRNA downstream 45989 27282600 ~ 27293085 (+) True abcg8
XM_007255769.3 mRNA downstream 196251 27432862 ~ 27467984 (+) True ppm1b
XM_007255768.3 mRNA downstream 196251 27432862 ~ 27467984 (+) False ppm1b
XM_022684959.1 mRNA downstream 197322 27433933 ~ 27467984 (+) False ppm1b
XM_022684960.1 mRNA downstream 206610 27443221 ~ 27467984 (+) False ppm1b
TU297390 other upstream 1927573 25256950 ~ 25302587 (+) True G219171
TU297354 other upstream 2057917 25161942 ~ 25172243 (+) False dapp1
TU297241 other upstream 2387627 24842302 ~ 24842533 (+) True G219050
TU296854 other upstream 3166372 24059211 ~ 24063788 (+) True G218758
TU296687 other upstream 3521917 23696577 ~ 23708243 (+) True G218651
XR_002651967.1 other downstream 1254235 28490846 ~ 28549320 (+) False plekhh2
TU298587 other downstream 1482645 28719256 ~ 28720661 (+) True G220074
TU298732 other downstream 1904756 29141367 ~ 29142018 (+) True G220194
TU298921 other downstream 2551328 29787939 ~ 29793496 (+) True G220336
TU298923 other downstream 2551328 29787939 ~ 29793496 (+) False G220336

Expression Profile