RNA id: TU298020


Basic Information

Item Value
RNA id TU298020
length 916
lncRNA type inter_gene
GC content 0.31
exon number 2
gene id G219627
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 27187988 ~ 27211622 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

atataatataatataaatatgcatACGTTATCAGACAGTTATCAGACAgttctaaaatgaaaatgtgaaaatgtgaatacccaatcatgagtacagtgtactttaatgtaagcaaggttggggaagtgttaatataaataattaagttgttgaataatgtcagAGAGGTGTGTGACTGGATAAATAATTAGAGAATTTAGAGAGTTTAATACAGGGATTATGGAGACAGAATTGAGGaaaataattagcttaattttggGTATTGGACTATATCTTGGGGGCGCTAACCCAACAGGGACATATGTCTAACTCTATATTCTATTAGCAAagctaataatgaaaaaatgactGTGTGTGGCTGTTTCGGAATCGTCTCCTATTGCAGAAATACTAAGCAATTTGGATTGGCCATTTTTACAATGCTTTGTCGAAACTCAGCAGTATATTTTTCcccatatagttcactattaattacattatattataataatattgtacagaagatgtatgctagaaattccaaaatatactatgccatgcagtactgctgtgtaagatgtcctcagagcaggacaaataAATATGGTTTCTTGTTTGATTCTTAAATAACCAGTTCAATGaatagaaaatgctacatagttaatagtgaatgaattaatgagcgagccattccaaacacagctttttctatCAGGTGATTTAGTTAATTATCTTAATATTCGTTTCTTATTCAGACTGATCTCAGTTCAGTCCTAGCATCACCTATCGGACAGATGtaatatctaatttctctatgATCTCATGTATATCCGTCTATGCTAATATTTTGATTATCTTAAGAGCGATAGTAGATTTCAGAAACCAGTGAGGAAAgaccttatttttattattattattattattattttttaaggaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU297997 lncRNA upstream 95812 27090463 ~ 27092176 (+) True G219618
TU297996 lncRNA upstream 99436 27086005 ~ 27088552 (+) True G219617
TU297934 lncRNA upstream 114453 26982620 ~ 27073535 (+) False G219565
TU297936 lncRNA upstream 118120 26982620 ~ 27069868 (+) True G219565
TU297933 lncRNA upstream 202164 26982620 ~ 26985824 (+) False G219565
TU298031 lncRNA downstream 87 27211709 ~ 27218211 (+) True G219631
TU298030 lncRNA downstream 1734 27213356 ~ 27218211 (+) False G219631
TU298006 lncRNA downstream 14032 27225654 ~ 27236616 (+) False LOC111196018
TU298008 lncRNA downstream 16520 27228142 ~ 27236616 (+) True LOC111196018
TU298009 lncRNA downstream 16520 27228142 ~ 27236616 (+) False LOC111196018
XM_022684946.1 mRNA upstream 6071 27094098 ~ 27181917 (+) True cep170
XM_015601678.2 mRNA upstream 6071 27094098 ~ 27181917 (+) False cep170
XM_022684947.1 mRNA upstream 6071 27094099 ~ 27181917 (+) False cep170
XM_022684949.1 mRNA upstream 6071 27094099 ~ 27181917 (+) False cep170
XM_022684950.1 mRNA upstream 6071 27094099 ~ 27181917 (+) False cep170
XM_022684956.1 mRNA downstream 18538 27230160 ~ 27236611 (+) False LOC111196018
XM_022684954.1 mRNA downstream 18539 27230161 ~ 27236611 (+) False LOC111196018
XM_007255765.3 mRNA downstream 70978 27282600 ~ 27293085 (+) True abcg8
XM_007255769.3 mRNA downstream 221240 27432862 ~ 27467984 (+) True ppm1b
XM_007255768.3 mRNA downstream 221240 27432862 ~ 27467984 (+) False ppm1b
TU297390 other upstream 1885401 25256950 ~ 25302587 (+) True G219171
TU297354 other upstream 2015745 25161942 ~ 25172243 (+) False dapp1
TU297241 other upstream 2345455 24842302 ~ 24842533 (+) True G219050
TU296854 other upstream 3124200 24059211 ~ 24063788 (+) True G218758
TU296687 other upstream 3479745 23696577 ~ 23708243 (+) True G218651
XR_002651962.1 other downstream 13670 27225292 ~ 27236611 (+) False LOC111196018
XR_002651965.1 other downstream 18535 27230157 ~ 27236611 (+) False LOC111196018
XR_002651959.1 other downstream 18537 27230159 ~ 27236611 (+) False LOC111196018
XR_002651961.1 other downstream 18538 27230160 ~ 27236611 (+) False LOC111196018
XR_002651960.1 other downstream 18538 27230160 ~ 27236611 (+) False LOC111196018

Expression Profile