RNA id: TU298532


Basic Information

Item Value
RNA id TU298532
length 1384
lncRNA type inter_gene
GC content 0.45
exon number 10
gene id G220032
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 28565015 ~ 28568032 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aattttattaaaaacaacaaactgtacataaacattaaatcaattcaacaaaacatttattaaaacatgtaaTTAAATATCTAGAACTATTGGAGCCATGTTTAGACTGATTAACTTCCCTCTTTATCCTGACTGGGAGCTAAAGACCAAGTTGCCCATCTAAACAATAGCTTAAGTAACTGTAAGCCAGCCGTTTTGTTCACAACTGTGGCACATGTAACAGACATACATTGTTCAATCCCTTTAAAAACAAcccaaattaagaaatatacaagaaagtCTTTGCTCTTGTGTACAGATGTCCAGTGCTAAGACTTAAAAATGGCACATGGCTGGTTTCATGACATTGGCTCCATCTCTCTGAGTCTTGTTGTACTGGGCCTGCTCTCGCCTCCTGAGAAAgaaGAGAACAAGAAGTCCAATGACCACAGCCAGGACGACCACCACAATGACAGCAATCACACCCCCGGTCAGCGCCTTCATGGTGAAGGTGGGAGCTACCTCATCAACATAGTACACCAGGATGTTATTCATAGGGACATCAGTGCTGGCAGTAGTAAGTTTAAATGGAGCTGAATCCTTAAACAAGGGCAGGACCTTGacATCTTTCTCCATGTAATAGCCCACAAGGGGTAGGTCAACACTACGATCCTCTTTTGGTTTCTCCAGGTCCACAACAATCATACGAGCATCTGGGTCATACTCAACTTTCTTCACAAATTCCTTTTTGAGGTAATAACGCTGCAGAAGAACATTTTCAACCGCAGTCCTCAGTTGTTCAGTAGTTGGAATGGAGCTTGTTGCATTGTGGGTCAACTGAAGACGAACCCAGTAGGTCTCCACTGGGTCACACTTGATGTTTTTGTCCCCTTTGTCAGATCTGCGGACACCTGCACTGTTGACACACCAGCAGGTTTCTGTGCCGTTGCACTGGACAGCCTTGAAGCCTCCATTAGCATCACAGACAGGATCATAAATCCCATCGTTATCCACAAAAGCAGTCTCCACTGGCTTTCCACCGATTGATCTGGTGCTCTGATTAGTTCTGGCACGGTGCATTTCTGCCTTCATCAGGAAGCATTTAGGAATCAATTTGTTGCAGTCCACTGCCTGCTTGTTTCCAACTCCCAACATCAGCGTACAGGCACATGGATCTCCATCACAGACTCCCCATTTCATTGTTTTGCacaCACCACACTGTGCAGAAGCTCCAGCAACAAAAGCGAGGAGGCACAAAGCGATTAAGGTCCTCATCTTGAATGTTATGATTTCTCTGTCTCCTCCACCGCGAGCTCCACTGGACTAACTTAACCCAGCCCCAGGTGACAATTATACCTGAGCAGGCAACTGACGTCACGTGAGACCAGGATGTAGGCGGGAAACG

Function

GO:

id name namespace
GO:0016070 RNA metabolic process biological_process
GO:0090304 nucleic acid metabolic process biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU298389 lncRNA upstream 340403 28219695 ~ 28224612 (+) False G219914
TU298388 lncRNA upstream 340403 28219794 ~ 28224612 (+) True G219914
TU298392 lncRNA upstream 379590 28182861 ~ 28185425 (+) True G219917
TU298366 lncRNA upstream 616920 27947861 ~ 27948095 (+) True G219896
TU298361 lncRNA upstream 636276 27928534 ~ 27928739 (+) True G219891
TU298607 lncRNA downstream 276438 28844470 ~ 28860775 (+) True G220094
XR_002651985.1 lncRNA downstream 535740 29103772 ~ 29113662 (+) True LOC107197787
TU298761 lncRNA downstream 728055 29296087 ~ 29296359 (+) True G220209
TU298787 lncRNA downstream 843515 29411547 ~ 29420180 (+) True G220227
TU298798 lncRNA downstream 871994 29440026 ~ 29440318 (+) True G220236
XM_007255793.2 mRNA upstream 13246 28490847 ~ 28551769 (+) True plekhh2
XM_007255772.3 mRNA upstream 720774 27840844 ~ 27844241 (+) True six3
XM_022684963.1 mRNA upstream 853296 27510214 ~ 27711719 (+) True camkmt
XM_007255771.3 mRNA upstream 1072599 27473909 ~ 27492416 (+) True slc3a1
XM_022684959.1 mRNA upstream 1097031 27433933 ~ 27467984 (+) False ppm1b
XM_022684972.1 mRNA downstream 10624 28578656 ~ 28607913 (+) True LOC103033108
XM_015607470.2 mRNA downstream 10626 28578658 ~ 28607913 (+) False LOC103033108
XM_007255786.3 mRNA downstream 48022 28616054 ~ 28621231 (+) True LOC103028596
XM_015607472.2 mRNA downstream 56238 28624270 ~ 28631758 (+) False stpg4
XM_022684974.1 mRNA downstream 56240 28624272 ~ 28631758 (+) False stpg4
XR_002651967.1 other upstream 15695 28490846 ~ 28549320 (+) False plekhh2
XR_002651959.1 other upstream 1328404 27230159 ~ 27236611 (+) False LOC111196018
TU298587 other downstream 151224 28719256 ~ 28720661 (+) True G220074
TU298732 other downstream 573335 29141367 ~ 29142018 (+) True G220194
TU298921 other downstream 1219907 29787939 ~ 29793496 (+) True G220336
TU298923 other downstream 1219907 29787939 ~ 29793496 (+) False G220336
TU298924 other downstream 1219907 29787939 ~ 29793496 (+) False G220336

Expression Profile