RNA id: TU298787


Basic Information

Item Value
RNA id TU298787
length 663
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id G220227
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 29411547 ~ 29420180 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ttaaaattccaccaaaatcctgatttttgtgtaaatatctgtttttatgttccatttatttcatatttgtacTGGGGGATCTTTTATTTTAGAGTGTTGGTTTACTGTgtactgtccctttaagagactCAGCTCTATTTGGCGCCATCGGCGTACTGATCTCAGTCTGTGTATAACTAACAGAGAGAAGGTACGTAGTTCTGATGTCTGTgcttaaaacacatatttttctgttaaaacagCATAATATGGGCAGTAAGTAGTGTTAAAAGCTAGAAACAGGATTGTGAACGTGTAAATATGCAGTAGTTTTAAGGTGAACTTTATAAAATGTCTTTTATGTCGAGTTTTACTGACACACGTGCTCTGTGGCTTCACGCCCCCCCCCCGTGTGCATTTCTGCTAACAGAGAGAAGGAGGCTGATAACCTGCAtgtatatgagagagagagcagcgtgtatgttcactgcagagctgtatgttcaaTCCAGAGCTTTATGagcttatttatctgtttatacaGACCCGCAAAATTAAAGCATCCAAACCAGCAGTGGCCGTGGTCCGAGTCCTTCCTCACCGTGTCACAGAACACAACGCAGAGTATCCATGGGTTAACGGGAGTGTGAATGGACAGTTCTGACCATCTCACAGTTCCAATAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU298761 lncRNA upstream 115188 29296087 ~ 29296359 (+) True G220209
XR_002651985.1 lncRNA upstream 297885 29103772 ~ 29113662 (+) True LOC107197787
TU298607 lncRNA upstream 550772 28844470 ~ 28860775 (+) True G220094
TU298532 lncRNA upstream 843515 28565015 ~ 28568032 (+) True G220032
TU298798 lncRNA downstream 19846 29440026 ~ 29440318 (+) True G220236
TU298827 lncRNA downstream 70191 29490371 ~ 29490631 (+) True G220258
TU298835 lncRNA downstream 95806 29515986 ~ 29516761 (+) True G220264
TU298865 lncRNA downstream 146336 29566516 ~ 29566717 (+) True G220288
TU298870 lncRNA downstream 212442 29632622 ~ 29634991 (+) True G220291
XM_007255794.3 mRNA upstream 398880 29008636 ~ 29012667 (+) True zfp36l2
XM_022684976.1 mRNA upstream 405956 28874020 ~ 29005591 (+) True LOC107197786
XM_007255778.2 mRNA upstream 670004 28735759 ~ 28741543 (+) True mcfd2
XM_015607474.2 mRNA upstream 670004 28735771 ~ 28741543 (+) False mcfd2
XM_007255781.3 mRNA upstream 779789 28624274 ~ 28631758 (+) True stpg4
XM_007235270.3 mRNA downstream 50161 29470341 ~ 29483040 (+) True haao
XM_007235276.2 mRNA downstream 80826 29501006 ~ 29502519 (+) True LOC103023539
XM_007235275.2 mRNA downstream 93974 29514154 ~ 29515720 (+) True LOC103023222
XM_007235269.2 mRNA downstream 97324 29517504 ~ 29520975 (+) True LOC103021558
XM_022684713.1 mRNA downstream 103160 29523340 ~ 29528086 (+) True LOC103022910
TU298732 other upstream 269529 29141367 ~ 29142018 (+) True G220194
TU298587 other upstream 690886 28719256 ~ 28720661 (+) True G220074
XR_002651967.1 other upstream 862227 28490846 ~ 28549320 (+) False plekhh2
XR_002651963.1 other upstream 2174936 27230162 ~ 27236611 (+) False LOC111196018
TU298921 other downstream 367759 29787939 ~ 29793496 (+) True G220336
TU298923 other downstream 367759 29787939 ~ 29793496 (+) False G220336
TU298924 other downstream 367759 29787939 ~ 29793496 (+) False G220336
TU298927 other downstream 367759 29787939 ~ 29793496 (+) False G220336
TU299278 other downstream 1528832 30949012 ~ 30951941 (+) True G220610

Expression Profile