RNA id: TU298798


Basic Information

Item Value
RNA id TU298798
length 293
lncRNA type inter_gene
GC content 0.29
exon number 1
gene id G220236
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 29440026 ~ 29440318 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aaaaaagacgctatgacatgaataaacataaaatgatcagtaaaaaaaaacattacgcaaaatctttaaagttggtaaaggaaaaaatgcacgTAAATTTATTtcacacagttttaatttccttaaataatccctttaataatttaaattattttaattatttttaatgataacacaatacttaatactggcccctgttcatttatgtcctgagatggTTTCATCAAGAGGCATGGACAACAGTACAGAAGTCAGTCTCTaaacacaagcagctacagaaaagcaccagaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU298787 lncRNA upstream 19846 29411547 ~ 29420180 (+) True G220227
TU298761 lncRNA upstream 143667 29296087 ~ 29296359 (+) True G220209
XR_002651985.1 lncRNA upstream 326364 29103772 ~ 29113662 (+) True LOC107197787
TU298607 lncRNA upstream 579251 28844470 ~ 28860775 (+) True G220094
TU298533 lncRNA upstream 871994 28565559 ~ 28568032 (+) False G220032
TU298827 lncRNA downstream 50053 29490371 ~ 29490631 (+) True G220258
TU298835 lncRNA downstream 75668 29515986 ~ 29516761 (+) True G220264
TU298865 lncRNA downstream 126198 29566516 ~ 29566717 (+) True G220288
TU298870 lncRNA downstream 192304 29632622 ~ 29634991 (+) True G220291
TU298869 lncRNA downstream 195743 29636061 ~ 29640401 (+) True LOC103047316
XM_007255794.3 mRNA upstream 427359 29008636 ~ 29012667 (+) True zfp36l2
XM_022684976.1 mRNA upstream 434435 28874020 ~ 29005591 (+) True LOC107197786
XM_007255778.2 mRNA upstream 698483 28735759 ~ 28741543 (+) True mcfd2
XM_015607474.2 mRNA upstream 698483 28735771 ~ 28741543 (+) False mcfd2
XM_007255781.3 mRNA upstream 808268 28624274 ~ 28631758 (+) True stpg4
XM_007235270.3 mRNA downstream 30023 29470341 ~ 29483040 (+) True haao
XM_007235276.2 mRNA downstream 60688 29501006 ~ 29502519 (+) True LOC103023539
XM_007235275.2 mRNA downstream 73836 29514154 ~ 29515720 (+) True LOC103023222
XM_007235269.2 mRNA downstream 77186 29517504 ~ 29520975 (+) True LOC103021558
XM_022684713.1 mRNA downstream 83022 29523340 ~ 29528086 (+) True LOC103022910
TU298732 other upstream 298008 29141367 ~ 29142018 (+) True G220194
TU298587 other upstream 719365 28719256 ~ 28720661 (+) True G220074
XR_002651967.1 other upstream 890706 28490846 ~ 28549320 (+) False plekhh2
XR_002651963.1 other upstream 2203415 27230162 ~ 27236611 (+) False LOC111196018
TU298921 other downstream 347621 29787939 ~ 29793496 (+) True G220336
TU298923 other downstream 347621 29787939 ~ 29793496 (+) False G220336
TU298924 other downstream 347621 29787939 ~ 29793496 (+) False G220336
TU298927 other downstream 347621 29787939 ~ 29793496 (+) False G220336
TU299278 other downstream 1508694 30949012 ~ 30951941 (+) True G220610

Expression Profile