RNA id: TU298870


Basic Information

Item Value
RNA id TU298870
length 2303
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G220291
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 29632622 ~ 29634991 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGGAAAACCAACACGTCTACAGGTCTATTAAAAGTTCTACATCTGTTCGTATCACTTAGATTCATCTTATTTCAGAACAATAGGAGTCGTCATCTCACACAGAGAGTCAGGGGATGGGAGCATCTCCAGCACTCCTGAAGATCACACTCAGAAAAAAGGAAGTTAAGATCACAGATTTCTCCCACACGCTGTGATGTTTCCCTCAGCTGTGGAGGCGAGCTGATACACCTCCCCGTTATGGCTGTTATTGTCACTAATGAGCATCTTTATTCATTCATTGCTGTCATGGTTAAGTGCTTTCCTCATGAGATGCAGAGTGCACCGTGTGTCTTTGAGTGTATACGAGACTGATTGGAAGATGATCCATTTTGAGGCTGATGCCAGCAATGAAGATGTGTCTGGTGTGCTGCAGCATTTCCCCCCTGgctaattaaacctctgattaTTCAGAGAGGTCTGCTCCACCTAACATTAACTCCATTATACTTATGCTTGTCTCTCTTGGCCTCTCCAGTGGAGACAGAGAAGTGAGAGTGTGAAGCCAAGTTTTTTACTCAAGCTGTCAGTCAGTTCATGGTAAATTGATTTAATCTCAGTGCTTTTCTACTCGGCCCATTTCAATAACCACTGTAAACATGATTTTCATTTACTTTACCCGGCAGGATGAACGAGCTATAATGAAGAGCTTAAGAATTCCatgaaaaagaacacagacctTAGCATGTGCGCCAAAGGCCATCAAAGCTCATAAGCAGGATAGCTTCACCAGTGGGGTTGAatattaattacttttatttccTGAGTCCTCTCCTCGCCGCAGCTGAAGAATGTGCCTCATTAATGAATGCCATATTTTAATATCCTGGAGAATAGCTTTGTGTTGTTCTTGGAACAGCTTGATCCCAATGGAAATtataatgatttgattaatatgTTAAAGCAAAGCTTTGAACaaaatagaaacattttaataattgaaGAAAAGGTATGTTATGAACAATGTTATGATAATGCTTTACTAAGTGTGATGATTTTGCTGCCAACCAACTGTGTTACtatgttatataatttttatgtgACAATTTTAGGTAACAACCCCCATTTACTACCAATCATGAAGAAATAGAATGCCATACATCTACATTATAAGTAAATCTGTTTTCAGATGCCATCTGtcacattttgatttttttatgtatgtacTTTACAAGGAGGAGAGAAACACATTCTTTAGTGGtagtttatataaaacattttatcataTTGACCATAATAAGAGGTATAATATTGTCAATTTTGAtcaaatttttttattaaaaactggaTCATCTCAGAGAATTTAAACTGGATCTTCTTAGAGAGTGTAAACTGGCTATTTTCAGAGAATATAAACTGGATCCTCTCAGATTTTAAACTGGATCCTCCCAGAGAGTGTAAACATGATCTATAGGCCTTTCATGGTAAGATGCAATCAAAGAAAACAGTTATTCAAAAGTTATTTTAGTGGTGTTAGATGATATGAACTAAGAAAGAAAATATGATTTGACTTCATCCACCCCCCTATTCATAtgtttgtaatttaatatgtttgtttatgttgTTATGCTATGCTGATGTTTAGAATTTGTGCTTCTCTCCCCCTGATTGTACTGTAATTTCTACCTCTGTAATTTCACACATTGCATTCCACTATTCGACTACGGCTTACAAAACTGACTAGTGAATTCATTGGTTGACTACTTAATTAGACactttatacatttacaatacattttaatgcagACTTGATGCACATTTCTtcaatttaaaatactgtaaaaaaaaagtgttaagtgTACAAGTAATGGCACATTAAAATGTCAtgattttatgttaaatgtcaaaaaaataaatatgaatttggGGTTTGTTAACTCTTCATGTTTTACATAGACgaacaataaaatatcatttgACCAAGGATGCACAATGTTTTGCATAAGAttgtattaaagtttatttcagcACACAGCTACTTAGATTTCTGTAAATGGCTTTAGCTTTTGTGGGGAATTTTAATCAGAAGGTGTTGTgggtttaaatgttttgtaataGACTTCTAGATAAAAtggatttatttgtaaaaatatagaTAAGCCTATGTTTAAAATGCCAACAATGCAAAATTTTATGATTGTTTTTAGCGTTCCCTATCTTTCTAAAATAGAAAgtctattttatataaagtagCAAAACGTTGTTCCTGTAAAGGTTTCAGCAGTTCTATGAGAActaaagtattaaataaatttCTGAGGACCCAA

Function

GO: NA

KEGG:

id description
ko05033 Nicotine addiction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU298865 lncRNA upstream 65905 29566516 ~ 29566717 (+) True G220288
TU298835 lncRNA upstream 115861 29515986 ~ 29516761 (+) True G220264
TU298827 lncRNA upstream 141991 29490371 ~ 29490631 (+) True G220258
TU298798 lncRNA upstream 192304 29440026 ~ 29440318 (+) True G220236
TU298787 lncRNA upstream 212442 29411547 ~ 29420180 (+) True G220227
TU298869 lncRNA downstream 1070 29636061 ~ 29640401 (+) True LOC103047316
TU298894 lncRNA downstream 9682 29644673 ~ 29644936 (+) True G220314
TU298909 lncRNA downstream 111454 29746445 ~ 29753596 (+) False LOC103046096
XR_453286.3 lncRNA downstream 111463 29746454 ~ 29753748 (+) True LOC103046096
TU298908 lncRNA downstream 115185 29750176 ~ 29753596 (+) False LOC103046096
XM_007235267.2 mRNA upstream 3952 29615105 ~ 29628670 (+) True LOC103047633
XM_015601884.2 mRNA upstream 3952 29615105 ~ 29628670 (+) False LOC103047633
XM_022684461.1 mRNA upstream 70782 29561192 ~ 29561840 (+) True LOC111195944
XM_022684713.1 mRNA upstream 104536 29523340 ~ 29528086 (+) True LOC103022910
XM_007235269.2 mRNA upstream 111647 29517504 ~ 29520975 (+) True LOC103021558
XM_022684462.1 mRNA downstream 1140 29636131 ~ 29640401 (+) False LOC103047316
XM_007247398.3 mRNA downstream 514442 30149433 ~ 30153973 (+) True LOC103028857
XM_022684980.1 mRNA downstream 812462 30447453 ~ 30467966 (+) False LOC103027087
XM_022684981.1 mRNA downstream 814950 30449941 ~ 30467966 (+) False LOC103027087
XM_007247393.3 mRNA downstream 815067 30450058 ~ 30467966 (+) True LOC103027087
TU298732 other upstream 490604 29141367 ~ 29142018 (+) True G220194
TU298587 other upstream 911961 28719256 ~ 28720661 (+) True G220074
XR_002651967.1 other upstream 1083302 28490846 ~ 28549320 (+) False plekhh2
XR_002651963.1 other upstream 2396011 27230162 ~ 27236611 (+) False LOC111196018
TU298921 other downstream 152948 29787939 ~ 29793496 (+) True G220336
TU298923 other downstream 152948 29787939 ~ 29793496 (+) False G220336
TU298924 other downstream 152948 29787939 ~ 29793496 (+) False G220336
TU298927 other downstream 152948 29787939 ~ 29793496 (+) False G220336
TU299278 other downstream 1314021 30949012 ~ 30951941 (+) True G220610

Expression Profile