RNA id: XR_453286.3


Basic Information

Item Value
RNA id XR_453286.3
length 493
lncRNA type inter_gene
GC content 0.42
exon number 4
gene id LOC103046096
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 29746445 ~ 29753748 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CATAAGTGACAAAAGATCCATCTGGAGAGAGGACACAACAATTTTAACACTGATTTTCAAGCTACAAGAACTCTgaacataaaaccacaatgaAGGCCTGGTTCCTGCTGTTCGTGCTGCTGCCTCTCTGCTTGGCGGACTATAAAATCAAGTGCTATGGGGAGGATTTCCTGATGGTGAGGAACCAGGTTCTGCAATGCTCAAGCAAAGTGCCGCAGTCGTGCTACACCAGATcTTCTGGAGAGAAGGGCTGTGCTAGACAAGAGTTCTGTCAGAGACCAGGATGGAAATGCTGCAACACAGACCTGTGCAATGCCTAATTCAACACCAGGGGGAGCTAGAGACTACAGTCTACAGTCGGGAGTATTTAAACTCTAAAAGAAAAGCAATTCTTACTTCTTACTACTTACATTTTCCATCACTTTgttctgtttcatttttttaaactgtaaaaatgtgatatagcaaaataaacaattttcctACAACCACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU298894 lncRNA upstream 101518 29644673 ~ 29644936 (+) True G220314
TU298869 lncRNA upstream 106053 29636061 ~ 29640401 (+) True LOC103047316
TU298870 lncRNA upstream 111463 29632622 ~ 29634991 (+) True G220291
TU298865 lncRNA upstream 179737 29566516 ~ 29566717 (+) True G220288
TU298835 lncRNA upstream 229693 29515986 ~ 29516761 (+) True G220264
TU299002 lncRNA downstream 249903 30003651 ~ 30064776 (+) True G220377
TU299014 lncRNA downstream 329401 30083149 ~ 30083617 (+) True G220388
TU299019 lncRNA downstream 348703 30102451 ~ 30159792 (+) True G220392
TU299021 lncRNA downstream 352677 30106425 ~ 30159792 (+) False G220392
TU299040 lncRNA downstream 432474 30186222 ~ 30188007 (+) True G220407
XM_022684462.1 mRNA upstream 106053 29636131 ~ 29640401 (+) False LOC103047316
XM_007235267.2 mRNA upstream 117784 29615105 ~ 29628670 (+) True LOC103047633
XM_015601884.2 mRNA upstream 117784 29615105 ~ 29628670 (+) False LOC103047633
XM_022684461.1 mRNA upstream 184614 29561192 ~ 29561840 (+) True LOC111195944
XM_022684713.1 mRNA upstream 218368 29523340 ~ 29528086 (+) True LOC103022910
XM_007247398.3 mRNA downstream 395685 30149433 ~ 30153973 (+) True LOC103028857
XM_022684980.1 mRNA downstream 693705 30447453 ~ 30467966 (+) False LOC103027087
XM_022684981.1 mRNA downstream 696193 30449941 ~ 30467966 (+) False LOC103027087
XM_007247393.3 mRNA downstream 696310 30450058 ~ 30467966 (+) True LOC103027087
XM_022684982.1 mRNA downstream 891608 30645356 ~ 30851385 (+) True LOC103026410
TU298732 other upstream 604436 29141367 ~ 29142018 (+) True G220194
TU298587 other upstream 1025793 28719256 ~ 28720661 (+) True G220074
XR_002651967.1 other upstream 1197134 28490846 ~ 28549320 (+) False plekhh2
XR_002651963.1 other upstream 2509843 27230162 ~ 27236611 (+) False LOC111196018
TU298921 other downstream 34191 29787939 ~ 29793496 (+) True G220336
TU298923 other downstream 34191 29787939 ~ 29793496 (+) False G220336
TU298924 other downstream 34191 29787939 ~ 29793496 (+) False G220336
TU298927 other downstream 34191 29787939 ~ 29793496 (+) False G220336
TU299278 other downstream 1195264 30949012 ~ 30951941 (+) True G220610

Expression Profile