RNA id: TU299002


Basic Information

Item Value
RNA id TU299002
length 1521
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G220377
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 30003651 ~ 30064776 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTGtcattatatacacatatatcatCATAAAAACCAAAAGCCATGTACATTTCAACTTTCATTTCATTGCTTTCCTTGAAAGCAGAGAACCATTTAATCCTTCACCTGTCAAGTAAAAGCTTCACATTTCCTTGGGAAATTCATAAACTGAGAAATTCACCTTGTTCATCACTGTAGTGAAAGCTTGGATCTCCACTCAGCGTAAGATGAAACAGATTCCACATTTTACACTGTTCATTACATTTGGTCAACAAAAGTatcattttcataaaaaaaaaacacatttcagcttcCCTCTCTTGGTATGAACTCTTTCGTAGCTGTTCCTGTTGCTCTGTTCTTGAGTCCTAATAATCCTGTCCCTAAACAGTACCATAACTTTGTTctgcacaaacaaataaacccTTTCAACCATTTGGAATCAAAGTGAAAGCTTTTATAAAGCTCAGCACGAGAATAAAGACCCTGTTAGACTCGAGAAAAAAAGTGCTGAAAACCGAAAAACAAGAAAGGAAAATGAGGAGCAGgaatggagggagggagggtttGAACAAAAGACTAGGAAGGAGATTGAACACATCTGCAGATATGGGCTGTATCAGACACACCAGCGCTGTGCGGATGGAACTTGACGTGGCATTGAGAAAGGATGCAATAAGGGAAATGGGGAGGAGGACAGGAAGAAGGGAGGAAGGAGAAGAAGAGTTAGGGGGAGACCTGATGATGTCTGGTGACTGAGTTGTTGGATGTGAGGACGTCTGCTAAAGGTGCAACACTAAGGTTGAACAATATGGAGAGAAATACCCTGTTTCTGAATGtactttcataaaaaaaacctttaaaacgTTTTAGATGCAAAACAAAGGCAGAATCATATGAGATTTTGACGATGTTTGCTTCAAAAACGATATACACTGATGGGATAGCAGTGCAGTGCTTAAACTGATTATACAGCCTGTGTAACagctcacacctgtataagttgtgaggtgttttcttgtggGTGAGGGTAAACACAGGCTAGCATACTCATGGCTAGCTGAAATTAattgttgagttgagttggagtGAAGCCTGACAGTGGGTGTCAGGATGATGGAACAATCCATTTCTTGAAATTGAAGCtgtgtgggcatttaacatttcatggtccacagtgtcacatgttttACTAGGAATCTGTCATATCATACATTTCCACACACAGTGGACATTGTACTGTCTGGTATTGATTGTGACTGGCCGTGTCTGGCTTGggttgtccatgtgaacagataCAAGTGACTCTGTCTAAAATCACAGCCATATCCAATGCAGGAAGACCTACACATATATCCTACTTCAGTACTGCATTTTTTAGCTTCAAGAGGACATAGCAAAATCATGGGATAAACTACTATAAATACTACCAATGTATTTCTCTGTAATGATAATTTAACCGCCATTTCTTAATACTAAAAATTAATTGTGAAAACGTCAGAtacactctaaaaaacagaggtacgaaaggagtactttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_453286.3 lncRNA upstream 249903 29746454 ~ 29753748 (+) True LOC103046096
TU298909 lncRNA upstream 250055 29746445 ~ 29753596 (+) False LOC103046096
TU298908 lncRNA upstream 250055 29750176 ~ 29753596 (+) False LOC103046096
TU298894 lncRNA upstream 358715 29644673 ~ 29644936 (+) True G220314
TU298869 lncRNA upstream 363250 29636061 ~ 29640401 (+) True LOC103047316
TU299014 lncRNA downstream 18373 30083149 ~ 30083617 (+) True G220388
TU299019 lncRNA downstream 37675 30102451 ~ 30159792 (+) True G220392
TU299021 lncRNA downstream 41649 30106425 ~ 30159792 (+) False G220392
TU299040 lncRNA downstream 121446 30186222 ~ 30188007 (+) True G220407
XR_002651975.1 lncRNA downstream 786946 30851722 ~ 30861583 (+) True LOC111196026
XM_022684462.1 mRNA upstream 363250 29636131 ~ 29640401 (+) False LOC103047316
XM_007235267.2 mRNA upstream 374981 29615105 ~ 29628670 (+) True LOC103047633
XM_015601884.2 mRNA upstream 374981 29615105 ~ 29628670 (+) False LOC103047633
XM_022684461.1 mRNA upstream 441811 29561192 ~ 29561840 (+) True LOC111195944
XM_022684713.1 mRNA upstream 475565 29523340 ~ 29528086 (+) True LOC103022910
XM_007247398.3 mRNA downstream 84657 30149433 ~ 30153973 (+) True LOC103028857
XM_022684980.1 mRNA downstream 382677 30447453 ~ 30467966 (+) False LOC103027087
XM_022684981.1 mRNA downstream 385165 30449941 ~ 30467966 (+) False LOC103027087
XM_007247393.3 mRNA downstream 385282 30450058 ~ 30467966 (+) True LOC103027087
XM_022684982.1 mRNA downstream 580580 30645356 ~ 30851385 (+) True LOC103026410
TU298921 other upstream 210155 29787939 ~ 29793496 (+) True G220336
TU298923 other upstream 210155 29787939 ~ 29793496 (+) False G220336
TU298924 other upstream 210155 29787939 ~ 29793496 (+) False G220336
TU298927 other upstream 210155 29787939 ~ 29793496 (+) False G220336
TU298732 other upstream 861633 29141367 ~ 29142018 (+) True G220194
TU299278 other downstream 884236 30949012 ~ 30951941 (+) True G220610
trnak-cuu_12 other downstream 1327958 31392734 ~ 31392806 (+) True trnak-cuu_12
trnaa-agc_18 other downstream 1338931 31403707 ~ 31403779 (+) True trnaa-agc_18
trnag-gcc_3 other downstream 1350124 31414900 ~ 31414970 (+) True trnag-gcc_3
trnag-gcc_5 other downstream 1357976 31422752 ~ 31422822 (+) True trnag-gcc_5

Expression Profile