RNA id: TU299021


Basic Information

Item Value
RNA id TU299021
length 1749
lncRNA type sense_over
GC content 0.40
exon number 2
gene id G220392
representative False

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 30102451 ~ 30159792 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcaccagGTGATAACCATCCTCTAATCCACCACTTTTCAACATAATGTTAAGTGTCACCCTGCAAGCCTAAAGCACTGTTTTAGATGCATGGGCAAAAAAATGGgggaaattaaataataaaaaaaaaagaataataataaaaaaaaaagaaaactactgtaaaattgatttttaatgCTTCTGATTCTTGTGAAAAACAAAGAATGCAACATTTTAGTACATTCTGCATGTGGCCTGTTACGTAAACTCAAAGCTCATTTAAGATAACAAAGGATATGCAAAAACGGGcatttaaacattataaaaacatgatttaactAAATTctgaaaattctttttttttttttttatccacttcACACAAGGATATTAGCAGCTTTGAACATGATGTTGAGATGTGGTGGAGTGTCGATCACAGGGCCAATCAGGGTTCATCTATTAGTCTGTCTGTGTAttatagaatataattgaagAATTTGGTGGGATATGATTTATCAAATTGacaaaacaacaattaaaacTGCCAAATTTGGGTCTGAGAAAGAAAAACTACACAAACTTCAGCAAAGTCAATATGTGAAATAAGCTCCTCAAGCACAAAAGCAAAATCCAGaagctttttttcccccaaaactGAGATCAGCTGAGAGAAAAAATGTTCCACCCCTTACGTTACACATAAAGATACACATAAATAACACATTACAAAAGAGGGGTGAAAAACACTGGTGCTGCAAAAATATCAAATTCACGTAAACAGACAACCATAGAAATCCATCACACCGGATTCAcaccagccacacacacaaacgcacacgcATACATTAAAAACTCTCTCTCCATGTGCAAGCGCACAAATCCAGACGACGCAGGCACTCACGggacacacacaccagcacggTTTGTGTGCTCCCAGATTTCCACACAGTTCAAATTCCACACAGTTCAAATTCACTTTACAGAGCATTCTGTAGCTGGGTGCCCTTAGCAGAGATATTGCAGTGACCAGGAAcggggaggaggagaggagctgCAGGTCTGTACGGCCTGAAGATGGCGCCATTCCATTATGGCTACTATTGAGACCCGAAGGTCCTGGAGGAACATCGTGCTTGCAAAGAGAACACCAGCGTTATTTCGCATTAATGCAACTGGAGACCTGTTCAATAAATCAAATCATTTTATGTTTGACtagcttaaaaataatttaatagcaTCTGGgacaaacaaattaaatagcATTCCTATGGAGGAGCTACTCTGAAAACTCATATTGCAAGAGAACCCTCTGCAGGCAGTTAAATACCTTGGctatatgtgtttttgttttttattataacctttttaaatatttgtttatatcaaATGAGAAACAAAACGGGAGGAAAATCACCTCCTAaatgagacagaaaaaaaaagaagaagaagaagtcaTGCATTCATCCACTGTCTATTACAGGAAATCAGAAAGGAGTGTGCAAGAAGCGGTGTTGCCGAGGCAACCTCTGCTGTAAATGTGCAGAAACCCAGGTTGGCGTTAGCAGAACAGTTCTGGGTCCAGTTCTGAGAGACATCACAGGTGTTGCCAGTCGATGCCCACCAGAGTCTGGTTTGCTTCCTGGGCGTGACCGATCTCCTCTGTGATGCTGTGCTGGCGCCAGAGCTTCTGGATTTTTCTGTAGCGCTCACGGCACAGGTGCAAGGGGTTTCCCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299014 lncRNA upstream 22808 30083149 ~ 30083617 (+) True G220388
TU299002 lncRNA upstream 41649 30003651 ~ 30064776 (+) True G220377
XR_453286.3 lncRNA upstream 352677 29746454 ~ 29753748 (+) True LOC103046096
TU298909 lncRNA upstream 352829 29746445 ~ 29753596 (+) False LOC103046096
TU299040 lncRNA downstream 26430 30186222 ~ 30188007 (+) True G220407
XR_002651975.1 lncRNA downstream 691930 30851722 ~ 30861583 (+) True LOC111196026
TU299272 lncRNA downstream 736336 30896128 ~ 30900415 (+) True G220605
TU299300 lncRNA downstream 962457 31122249 ~ 31176810 (+) False G220624
TU299306 lncRNA downstream 995338 31155130 ~ 31161593 (+) True G220629
XM_022684462.1 mRNA upstream 466024 29636131 ~ 29640401 (+) False LOC103047316
XM_007235267.2 mRNA upstream 477755 29615105 ~ 29628670 (+) True LOC103047633
XM_015601884.2 mRNA upstream 477755 29615105 ~ 29628670 (+) False LOC103047633
XM_022684461.1 mRNA upstream 544585 29561192 ~ 29561840 (+) True LOC111195944
XM_022684713.1 mRNA upstream 578339 29523340 ~ 29528086 (+) True LOC103022910
XM_022684980.1 mRNA downstream 287661 30447453 ~ 30467966 (+) False LOC103027087
XM_022684981.1 mRNA downstream 290149 30449941 ~ 30467966 (+) False LOC103027087
XM_007247393.3 mRNA downstream 290266 30450058 ~ 30467966 (+) True LOC103027087
XM_022684982.1 mRNA downstream 485564 30645356 ~ 30851385 (+) True LOC103026410
XM_022684984.1 mRNA downstream 764620 30924412 ~ 30942786 (+) True LOC103025585
TU298921 other upstream 312929 29787939 ~ 29793496 (+) True G220336
TU298923 other upstream 312929 29787939 ~ 29793496 (+) False G220336
TU298924 other upstream 312929 29787939 ~ 29793496 (+) False G220336
TU298927 other upstream 312929 29787939 ~ 29793496 (+) False G220336
TU298732 other upstream 964407 29141367 ~ 29142018 (+) True G220194
TU299278 other downstream 789220 30949012 ~ 30951941 (+) True G220610
trnak-cuu_12 other downstream 1232942 31392734 ~ 31392806 (+) True trnak-cuu_12
trnaa-agc_18 other downstream 1243915 31403707 ~ 31403779 (+) True trnaa-agc_18
trnag-gcc_3 other downstream 1255108 31414900 ~ 31414970 (+) True trnag-gcc_3
trnag-gcc_5 other downstream 1262960 31422752 ~ 31422822 (+) True trnag-gcc_5