RNA id: TU299040


Basic Information

Item Value
RNA id TU299040
length 1648
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G220407
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 30186222 ~ 30188007 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTATTTGTCACttgaatacataaataattgtgCCGAATCGCTTTACACCTAATTTCATTCcatattattctatttttatacaaactATATGGTGTTTTTCTTCATGAATTGGCTTATCAGCCTCAACTCATTTATAGCTTCTGAGATTCTGGCTGAGATTAAAGTGAAGCATTCCTCTCTGTCGCGCAACAAAGTTAGCACCATTCAGACAGAGGTCAGATACGGGTCACATTAAAAGCCTGTGTGAACTGCATactaaatatctattttaataatcatcaaatttgtggcacttttacctgctttgagaacgtagccaattattttatttttatttttatctctgtTATGAAGTGTATATTAGTGAGTTAGTGAGCTACAATATCAACAGGTAAGCTCAGATTTGGGTTTAGGCTGCAATACTAACACTGACAGCAACTGGCCTCAGCAGTGTTGAAGCAGTGTAgtcgcaatgctaacagccagcctctGCAGGCATGGGGGAGGATAGCTGCAATGCTAATCTGGATTACTTTGTGATAGTTGTTGATAGGCTGATATTTGTAGAAATGTGCATCATATACTGAACCAGTGTTATATAGCCCAGGATCTGTCTAATTTTCCGATACCCAATCCAGCAAATTTCTTATTATTGGGACCGGTATTCAATCCTAATATCAGATTGGTGCATCTCTACATATCTGAAAGCCTCACGGCACATGTCCACTGGCACTGAGCTCAGACGCATCctattaattgatttatttcggtgcatgctgggttgcaCTGCGTTAAACTTAGCCCCGCCCTCTGGTGAAAAAGTTTATCAGAGCTCAACTTTAGTCAAATGAATCTGGCCACCGCACtgtgtccagccaatcagggaacagcaaGCTGTGATTGCACACACatacgagcctcacacacagaacagccaGCTTTCAACCACAGAAGAAGAGCTGAAATAGGGGAAATAGATTTTATTGAGCTATTTATAGAGCTATACATTAATGTGAGGTTtactaaaattttaaaatattcaactaataattgtttattttagttgcttcttttgaatttaaaaacatCACGGACAAGCCCACGTGCGGCGACATGCGTCGAAGAGAAGTGCCAGTCGACATGTACCGCCACACACCTACAGCTACATGAACTACCCTAACAACTTAACACTCCACAGTGAAACAAGCTGCCTACTGAGCAGGGCAGTGATACATGCTTGTGTTTCTGAGAAGCATTTCTAACATCCCTCAGAGCAAACTATTACGTTTGTAGCCTATGACCCGTTCAGCATGTACTGTAGGTCACATCCAGAACTCCTGGCACACTGGCAGACTTTCTGGAGTTTCAGTGGGTCAGCCAGAACTGAGGCAGTGAGGTGATCTACTACAGCCCACAAGCCAAATAGGACAAAAGGTCAAGCTAAGCTAATCGCTCACACTCTGAGCTTATGATCCACAACCAACTGCAAGTAACTGACAGCATACGTTTTCTGAGCCACTACATGGAAGTATATGTgcactaaaaaactaaaaatatgcaTCCAAATAATTAAACTTTCCTGATAAAGCCCAGctccaaacacaaacacataattCCAGCACAAACAACAGTACAATcatattaaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299019 lncRNA upstream 26430 30102451 ~ 30159792 (+) True G220392
TU299021 lncRNA upstream 26430 30106425 ~ 30159792 (+) False G220392
TU299014 lncRNA upstream 102605 30083149 ~ 30083617 (+) True G220388
TU299002 lncRNA upstream 121446 30003651 ~ 30064776 (+) True G220377
XR_453286.3 lncRNA upstream 432474 29746454 ~ 29753748 (+) True LOC103046096
XR_002651975.1 lncRNA downstream 663715 30851722 ~ 30861583 (+) True LOC111196026
TU299272 lncRNA downstream 708121 30896128 ~ 30900415 (+) True G220605
TU299300 lncRNA downstream 934242 31122249 ~ 31176810 (+) False G220624
TU299306 lncRNA downstream 967123 31155130 ~ 31161593 (+) True G220629
TU299323 lncRNA downstream 984168 31172175 ~ 31175036 (+) False G220640
XM_007247398.3 mRNA upstream 32249 30149433 ~ 30153973 (+) True LOC103028857
XM_022684462.1 mRNA upstream 545821 29636131 ~ 29640401 (+) False LOC103047316
XM_007235267.2 mRNA upstream 557552 29615105 ~ 29628670 (+) True LOC103047633
XM_015601884.2 mRNA upstream 557552 29615105 ~ 29628670 (+) False LOC103047633
XM_022684461.1 mRNA upstream 624382 29561192 ~ 29561840 (+) True LOC111195944
XM_022684980.1 mRNA downstream 259446 30447453 ~ 30467966 (+) False LOC103027087
XM_022684981.1 mRNA downstream 261934 30449941 ~ 30467966 (+) False LOC103027087
XM_007247393.3 mRNA downstream 262051 30450058 ~ 30467966 (+) True LOC103027087
XM_022684982.1 mRNA downstream 457349 30645356 ~ 30851385 (+) True LOC103026410
XM_022684984.1 mRNA downstream 736405 30924412 ~ 30942786 (+) True LOC103025585
TU298921 other upstream 392726 29787939 ~ 29793496 (+) True G220336
TU298923 other upstream 392726 29787939 ~ 29793496 (+) False G220336
TU298924 other upstream 392726 29787939 ~ 29793496 (+) False G220336
TU298927 other upstream 392726 29787939 ~ 29793496 (+) False G220336
TU298732 other upstream 1044204 29141367 ~ 29142018 (+) True G220194
TU299278 other downstream 761005 30949012 ~ 30951941 (+) True G220610
trnak-cuu_12 other downstream 1204727 31392734 ~ 31392806 (+) True trnak-cuu_12
trnaa-agc_18 other downstream 1215700 31403707 ~ 31403779 (+) True trnaa-agc_18
trnag-gcc_3 other downstream 1226893 31414900 ~ 31414970 (+) True trnag-gcc_3
trnag-gcc_5 other downstream 1234745 31422752 ~ 31422822 (+) True trnag-gcc_5

Expression Profile