RNA id: TU299306


Basic Information

Item Value
RNA id TU299306
length 384
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G220629
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 31155130 ~ 31161593 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGTAACCCTGGTAAAATAAGCACTCTTTGGGTAAAGCCATTCTGAGGAGCCTGTGTGTAGACCCCTCCCACTTTtccctctctcccactctcccctctctccaccctcttctctctctaccttgctCTCTCCCAGCGTGTGTGTGCTGCACGGAGCTGGAGATAAATGTCCATTTTGTGTGTGAGGAAATATTGAGTAAAGACGCTGTTTAAACTGTACTACAGTGATACACAAGTACCCTCGTTGGAGATTTTTTTAGTTATCAACCGAGTTGGATAAACTTTTGCGCTGTTTGATTGAGGGAGACTCCGGTGAGTTCATATATTGCTGATTAGGAAAGAGTTTGCGAATATAACTTAGTGTTTTCATGTTCTAAGCTGTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299272 lncRNA upstream 254715 30896128 ~ 30900415 (+) True G220605
XR_002651975.1 lncRNA upstream 293547 30851722 ~ 30861583 (+) True LOC111196026
TU299040 lncRNA upstream 967123 30186222 ~ 30188007 (+) True G220407
TU299019 lncRNA upstream 995338 30102451 ~ 30159792 (+) True G220392
TU299323 lncRNA downstream 10582 31172175 ~ 31175036 (+) False G220640
TU299319 lncRNA downstream 11334 31172927 ~ 31175036 (+) False G220640
TU299320 lncRNA downstream 11334 31172927 ~ 31175036 (+) True G220640
TU299299 lncRNA downstream 13791 31175384 ~ 31176680 (+) True G220624
TU299413 lncRNA downstream 145176 31306769 ~ 31308879 (+) True G220692
XM_022684986.1 mRNA upstream 156632 30977403 ~ 30998498 (+) False lrrc73
XM_007247382.3 mRNA upstream 156632 30980808 ~ 30998498 (+) True lrrc73
XM_007247383.3 mRNA upstream 184480 30961520 ~ 30970650 (+) True yipf3
XM_022684985.1 mRNA upstream 184480 30961520 ~ 30970650 (+) False yipf3
XM_022684984.1 mRNA upstream 212344 30924412 ~ 30942786 (+) True LOC103025585
XM_015605347.2 mRNA downstream 82567 31244160 ~ 31282824 (+) False dlk2
XM_015605346.2 mRNA downstream 92120 31253713 ~ 31282824 (+) True dlk2
XM_015605348.2 mRNA downstream 92261 31253854 ~ 31282824 (+) False dlk2
XM_007247376.3 mRNA downstream 132588 31294181 ~ 31298256 (+) True mea1
XM_007247342.3 mRNA downstream 268687 31430280 ~ 31436529 (+) True mrps6
TU299278 other upstream 203189 30949012 ~ 30951941 (+) True G220610
TU298921 other upstream 1361634 29787939 ~ 29793496 (+) True G220336
trnak-cuu_12 other downstream 231141 31392734 ~ 31392806 (+) True trnak-cuu_12
trnaa-agc_18 other downstream 242114 31403707 ~ 31403779 (+) True trnaa-agc_18
trnag-gcc_3 other downstream 253307 31414900 ~ 31414970 (+) True trnag-gcc_3
trnag-gcc_5 other downstream 261159 31422752 ~ 31422822 (+) True trnag-gcc_5
trnak-cuu_13 other downstream 266647 31428240 ~ 31428312 (+) True trnak-cuu_13

Expression Profile