RNA id: TU299632


Basic Information

Item Value
RNA id TU299632
length 269
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G220851
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 32097084 ~ 32097352 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGGGTCCGTGAGCGCGCCGGATTAATGGCGGGTTGCCGGATGGCTGCTTGTCTGGACTGGACTCTATCTCTACCACCCCTTAACCCACATGTTGCCAGAACTGTCTATTGTCTGTGTATTGCATATGTGCTGAGGTTTTTTTTATGGTCCCATACTGTGCTTCCTTAGGAGCACAGTATGGggtatgctgtttttttttctcctctcctttCCCATTGTACCCCTCTTAATTTCCTATTCTCTGTCTTCCTGTCatgtaaccccccccc

Function

GO: NA

KEGG:

id description
ko01040 Biosynthesis of unsaturated fatty acids

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299606 lncRNA upstream 73183 31990028 ~ 32023901 (+) True G220830
TU299602 lncRNA upstream 136784 31953861 ~ 31960300 (+) True G220828
TU299575 lncRNA upstream 350195 31745630 ~ 31746889 (+) True G220802
TU299564 lncRNA upstream 445160 31650913 ~ 31651924 (+) True G220795
TU299553 lncRNA upstream 493759 31603058 ~ 31603325 (+) True G220788
TU299640 lncRNA downstream 87601 32184953 ~ 32187166 (+) True G220859
TU299643 lncRNA downstream 133558 32230910 ~ 32237552 (+) True G220862
TU299644 lncRNA downstream 133558 32230910 ~ 32237552 (+) False G220862
TU299660 lncRNA downstream 190488 32287840 ~ 32288493 (+) False map10
TU299668 lncRNA downstream 201980 32299332 ~ 32299534 (+) True G220879
XM_007247347.3 mRNA upstream 571741 31522285 ~ 31525343 (+) True c1d
XM_022684463.1 mRNA upstream 641254 31443031 ~ 31455830 (+) True psap
XM_007247342.3 mRNA upstream 660555 31430280 ~ 31436529 (+) True mrps6
XM_007247376.3 mRNA upstream 798828 31294181 ~ 31298256 (+) True mea1
XM_015605348.2 mRNA upstream 814260 31253854 ~ 31282824 (+) False dlk2
XM_007238455.3 mRNA downstream 187225 32284577 ~ 32288850 (+) True map10
XM_007238454.3 mRNA downstream 192500 32289852 ~ 32296881 (+) True ntpcr
XM_007238446.3 mRNA downstream 405422 32502774 ~ 32520384 (+) True LOC103027057
XM_007237264.3 mRNA downstream 516122 32613474 ~ 32672217 (+) True LOC103038412
XM_007237265.3 mRNA downstream 624753 32722105 ~ 32776771 (+) True golga4
TU299570 other upstream 358888 31736897 ~ 31738196 (+) True G220800
trnak-cuu_13 other upstream 668772 31428240 ~ 31428312 (+) True trnak-cuu_13
trnag-gcc_5 other upstream 674262 31422752 ~ 31422822 (+) True trnag-gcc_5
trnag-gcc_3 other upstream 682114 31414900 ~ 31414970 (+) True trnag-gcc_3
trnaa-agc_18 other upstream 693305 31403707 ~ 31403779 (+) True trnaa-agc_18
TU299723 other downstream 437704 32535056 ~ 32578552 (+) False LOC103027057
XR_002651979.1 other downstream 516122 32613474 ~ 32677285 (+) False LOC103038412
TU300211 other downstream 1346765 33444117 ~ 33444721 (+) True G221292
TU300330 other downstream 2065229 34162581 ~ 34183237 (+) True G221390
TU300434 other downstream 2889676 34987028 ~ 34997044 (+) True synj2bp

Expression Profile