RNA id: TU299731


Basic Information

Item Value
RNA id TU299731
length 378
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G220924
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 32494938 ~ 32495315 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aataaaaacggtaattaaaaggaaaaaacataactatctcaaactgtattttgtgtttataaaactaactaaaacgaactaaaattactgaattttcgtgtttaatttatttataagagctgttgtacagcggagttgtacagcgggcggtgttgccGAGCGCGCAAcacctcgtggtccgtggcgttagttcttgtgtaaagcgctcacgctagccgcaaaatacgacagaaaacactgaaaaactgcagaactatgtatgggattacaatatgagcgcaaggcagatgaaagagaaacaggagattcagtatgtgagaacatttacctgtgagtagctcattccagaacaagcaaatatttctctctctctctctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299720 lncRNA upstream 2933 32491723 ~ 32492005 (+) True G220919
TU299717 lncRNA upstream 32017 32461431 ~ 32462921 (+) True G220916
TU299693 lncRNA upstream 103665 32344777 ~ 32391273 (+) True G220894
TU299704 lncRNA upstream 119568 32374163 ~ 32375370 (+) True G220904
TU299684 lncRNA upstream 154646 32339025 ~ 32340292 (+) True G220891
TU299725 lncRNA downstream 7469 32502784 ~ 32509183 (+) False LOC103027057
TU299735 lncRNA downstream 90028 32585343 ~ 32585633 (+) True G220926
TU299751 lncRNA downstream 189924 32685239 ~ 32685607 (+) True G220940
XR_002651978.1 lncRNA downstream 214583 32709898 ~ 32711625 (+) True LOC111196029
TU299881 lncRNA downstream 224948 32720263 ~ 32720671 (+) True G221036
XM_007238454.3 mRNA upstream 198057 32289852 ~ 32296881 (+) True ntpcr
XM_007238455.3 mRNA upstream 206088 32284577 ~ 32288850 (+) True map10
XM_007247347.3 mRNA upstream 969595 31522285 ~ 31525343 (+) True c1d
XM_022684463.1 mRNA upstream 1039108 31443031 ~ 31455830 (+) True psap
XM_007247342.3 mRNA upstream 1058409 31430280 ~ 31436529 (+) True mrps6
XM_007238446.3 mRNA downstream 7459 32502774 ~ 32520384 (+) True LOC103027057
XM_007237264.3 mRNA downstream 118159 32613474 ~ 32672217 (+) True LOC103038412
XM_007237265.3 mRNA downstream 226790 32722105 ~ 32776771 (+) True golga4
XM_015602445.2 mRNA downstream 226790 32722105 ~ 32776771 (+) False golga4
XM_007237266.3 mRNA downstream 226791 32722106 ~ 32776771 (+) False golga4
TU299570 other upstream 756742 31736897 ~ 31738196 (+) True G220800
trnak-cuu_13 other upstream 1066626 31428240 ~ 31428312 (+) True trnak-cuu_13
trnag-gcc_5 other upstream 1072116 31422752 ~ 31422822 (+) True trnag-gcc_5
trnag-gcc_3 other upstream 1079968 31414900 ~ 31414970 (+) True trnag-gcc_3
trnaa-agc_18 other upstream 1091159 31403707 ~ 31403779 (+) True trnaa-agc_18
TU299723 other downstream 39741 32535056 ~ 32578552 (+) False LOC103027057
XR_002651979.1 other downstream 118159 32613474 ~ 32677285 (+) False LOC103038412
TU300211 other downstream 948802 33444117 ~ 33444721 (+) True G221292
TU300330 other downstream 1667266 34162581 ~ 34183237 (+) True G221390
TU300434 other downstream 2491713 34987028 ~ 34997044 (+) True synj2bp

Expression Profile