RNA id: TU299735


Basic Information

Item Value
RNA id TU299735
length 291
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G220926
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 32585343 ~ 32585633 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCTTAATACACTGATTAGGGGTTTATTCCTAAACGTGAAAACTGTAATACAAAAAATGATACAACAATAAGATaaacaaaattacaactttGCATATAAACTACCATGAACAGCATGAAATTGCATATTAAGtttcatttatgtattttagcAGATACTAGAAACAGTAGCACCAATACACTCATTAATCTTTcttaaaacaataatacaaaaaagagTAACACAAACCTCATTGGCTGCATAAATAACTCAGGGAGGGGTATGGCTTCCTTTACAGTGTCCCTTACCATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299725 lncRNA upstream 76160 32502784 ~ 32509183 (+) False LOC103027057
TU299731 lncRNA upstream 90028 32494938 ~ 32495315 (+) True G220924
TU299720 lncRNA upstream 93338 32491723 ~ 32492005 (+) True G220919
TU299717 lncRNA upstream 122422 32461431 ~ 32462921 (+) True G220916
TU299693 lncRNA upstream 194070 32344777 ~ 32391273 (+) True G220894
TU299751 lncRNA downstream 99606 32685239 ~ 32685607 (+) True G220940
XR_002651978.1 lncRNA downstream 124265 32709898 ~ 32711625 (+) True LOC111196029
TU299881 lncRNA downstream 134630 32720263 ~ 32720671 (+) True G221036
TU299942 lncRNA downstream 321837 32907470 ~ 32960375 (+) True G221090
TU299957 lncRNA downstream 397808 32983441 ~ 32985180 (+) True G221101
XM_007238446.3 mRNA upstream 64959 32502774 ~ 32520384 (+) True LOC103027057
XM_007238454.3 mRNA upstream 288462 32289852 ~ 32296881 (+) True ntpcr
XM_007238455.3 mRNA upstream 296493 32284577 ~ 32288850 (+) True map10
XM_007247347.3 mRNA upstream 1060000 31522285 ~ 31525343 (+) True c1d
XM_022684463.1 mRNA upstream 1129513 31443031 ~ 31455830 (+) True psap
XM_007237264.3 mRNA downstream 27841 32613474 ~ 32672217 (+) True LOC103038412
XM_007237265.3 mRNA downstream 136472 32722105 ~ 32776771 (+) True golga4
XM_015602445.2 mRNA downstream 136472 32722105 ~ 32776771 (+) False golga4
XM_007237266.3 mRNA downstream 136473 32722106 ~ 32776771 (+) False golga4
XM_007237268.3 mRNA downstream 193911 32779544 ~ 32905463 (+) True itga9
TU299723 other upstream 6791 32535056 ~ 32578552 (+) False LOC103027057
TU299570 other upstream 847147 31736897 ~ 31738196 (+) True G220800
trnak-cuu_13 other upstream 1157031 31428240 ~ 31428312 (+) True trnak-cuu_13
trnag-gcc_5 other upstream 1162521 31422752 ~ 31422822 (+) True trnag-gcc_5
trnag-gcc_3 other upstream 1170373 31414900 ~ 31414970 (+) True trnag-gcc_3
XR_002651979.1 other downstream 27841 32613474 ~ 32677285 (+) False LOC103038412
TU300211 other downstream 858484 33444117 ~ 33444721 (+) True G221292
TU300330 other downstream 1576948 34162581 ~ 34183237 (+) True G221390
TU300434 other downstream 2401395 34987028 ~ 34997044 (+) True synj2bp
TU300438 other downstream 2432820 35018453 ~ 35025598 (+) True srsf5

Expression Profile