RNA id: TU299957


Basic Information

Item Value
RNA id TU299957
length 734
lncRNA type inter_gene
GC content 0.40
exon number 5
gene id G221101
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 32983441 ~ 32985180 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ggtcaaataactgcaaagaataatgaactaaaaaaagtttaatatacTATTCATTTGCAACAAACGTTTTTCTTGTGATTCTTAAAATTGCAGATTATTTTGTGTAAAAGTTGGGCACAAAATTAAGTCCATATAAAtaagtttttcttttatgttcGAAAGTCATCACGTGTCTGTCAAATGTGTGGGGCAGACAGTGAATACAGTATTTCCACACCCACTTTGGGGTAAATGGAAAAAGTAGGTAATGCCTCAGAAATAGTAAAGGCGATAGAACCACTGCTGGGTTATCCAAGATGCTTCCGTGACATCAAACATGCTTCCTCTTCTATTCAGGGCACACAGTGGGCTCTGACCAGACAGTGACCCatccctcttctcttctctgtgttgtacctctttctctctgccaatagggggagcagcagcagatcacTGATCTCAGGAGGGCAGTTATTGTGTGTTCACTCCATTTTTGACATCTCATATTTTGTAGTCATAATTTcCTCATCAGAGTCGAGAAGAACAGGTAGAgcaACATCAGTTAAAGAGGaaggaatgttctcctccacccacTTCAAGTCTTCATCTGGTCCAGGAGTGGGCTTTGCTGTTCCATTCGTCTCAGACTTTGCTGCTCTCAATTTTATTCCGTCtgCAATATTTGCAGAAACTAAAAACTCTTCAATTTCTTCATCATCTGAATCATCAATTAAAGGTGTAAAAGCATACCt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299942 lncRNA upstream 23066 32907470 ~ 32960375 (+) True G221090
TU299881 lncRNA upstream 262770 32720263 ~ 32720671 (+) True G221036
XR_002651978.1 lncRNA upstream 271816 32709898 ~ 32711625 (+) True LOC111196029
TU299751 lncRNA upstream 297834 32685239 ~ 32685607 (+) True G220940
TU299735 lncRNA upstream 397808 32585343 ~ 32585633 (+) True G220926
TU299960 lncRNA downstream 1450 32986630 ~ 32988862 (+) False G221103
TU299961 lncRNA downstream 1450 32986630 ~ 32992463 (+) True G221103
TU299963 lncRNA downstream 1450 32986630 ~ 32987336 (+) False G221103
TU299964 lncRNA downstream 1450 32986630 ~ 32992327 (+) False G221103
TU299966 lncRNA downstream 7391 32992571 ~ 32997092 (+) True G221105
XM_022685007.1 mRNA upstream 9873 32946416 ~ 32973568 (+) True fbln7
XM_022685005.1 mRNA upstream 61863 32911781 ~ 32921578 (+) True LOC111196032
XM_022685006.1 mRNA upstream 61863 32911781 ~ 32921578 (+) False LOC111196032
XM_007237268.3 mRNA upstream 77978 32779544 ~ 32905463 (+) True itga9
XM_007237265.3 mRNA upstream 206670 32722105 ~ 32776771 (+) True golga4
XM_022685010.1 mRNA downstream 124779 33109959 ~ 33210737 (+) True acoxl
XM_007228745.3 mRNA downstream 228448 33213628 ~ 33232791 (+) True bcl2l11
XM_007228747.3 mRNA downstream 469596 33454776 ~ 33458782 (+) True LOC103021727
XM_022684765.1 mRNA downstream 1808903 34794083 ~ 34829457 (+) True LOC103021397
XM_007247598.3 mRNA downstream 1859314 34844494 ~ 34858483 (+) True l2hgdh
XR_002651979.1 other upstream 306156 32613474 ~ 32677285 (+) False LOC103038412
TU299723 other upstream 404889 32535056 ~ 32578552 (+) False LOC103027057
TU299570 other upstream 1245245 31736897 ~ 31738196 (+) True G220800
trnak-cuu_13 other upstream 1555129 31428240 ~ 31428312 (+) True trnak-cuu_13
trnag-gcc_5 other upstream 1560619 31422752 ~ 31422822 (+) True trnag-gcc_5
TU300211 other downstream 458937 33444117 ~ 33444721 (+) True G221292
TU300330 other downstream 1177401 34162581 ~ 34183237 (+) True G221390
TU300434 other downstream 2001848 34987028 ~ 34997044 (+) True synj2bp
TU300438 other downstream 2033273 35018453 ~ 35025598 (+) True srsf5
XR_002651984.1 other downstream 2884838 35870018 ~ 35888815 (+) True gclc

Expression Profile