RNA id: TU300086


Basic Information

Item Value
RNA id TU300086
length 3334
lncRNA type sense_over
GC content 0.37
exon number 3
gene id bcl2l11
representative False

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 33213628 ~ 33232791 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CGCGGAGCTGCGAGGAAGTTTCTCTCGGAGCGCACGAGCGAACAAAAGACCAAAAACACCGCGCGGACCTGCCTTTAACTTTTGATAGTCTAGCGACAATACAGAGCCGAATGTTTTAACCTGCTCGCCTTCTGTCGATTGAGAATGTTACAGTAGAACATCTGCTCCATGCGACTTCTTTTGTGCgcttttttgtcctttttaattCTCTGAACTGCGGATTTTTCTTGCGCTCTTGTCGCGTGTCTTGTTTTTTAACTTTCGCCGTGCCCAGCCGAGACGTATGATCTACCAGAATGTCCAGAGTTATGTCCAGGACCTAACCACTGTCCACCCCACAGAGCAGCGGCTGCGGGGGACATGCAAGCGCATTGGTACATCGCGCAAGAGTTGCGACGCATTGGGGATGAATTCAACGATCTGTACTTCCGAGGGGCAGGCAGAAATGGAGGTGGTGCCCAACTTCCTGCACAAAATGAACCCGCCTTCATACTGTGGATGGGGCTCCTGATTGAACGTCTCCGACAGTTCCTCCACAGAAGAAGATGACGGGCGTCCGATGCACCCAGCAGACAAGACCAGTAGCAGACTGtagatatatatgtgtatatatatatatatatatataaatggaaTTTCTTCctccttgtttttttgcatttctggAAGCTGTCCTCTACTGACTTCAACATTCCCCATATGGACACGCCGGGACTAAGCGATAATTCTGGAACGTAAATCGGAATCAGCAGTGTTTCCtgcataaatgtataaaactgaGCCATTAACACTGGATAGAGAGGACCAAATGGACCTTTCTCTGTCTGTAGAGATATTTTCTCCAACAACAAGAGGTGGAAAATGTGCCTTCATCACCTCGGTGCCCTTATCTTCTTCTTCACTTTTTATTCTTTGTCCAatttatttggttttaatttgttttcatttggtttaattgtttttttttgtatctcacCTCTCGTctgtatttatttgcatatatgtatttatgtttatgtactttttttataattattattgaagTGGATGTTAGTCAGTCAGCAGTAGTGTAGTTTAGCCTGTTCTTCATCTCTCTATTGACTCCATTGAATTTTGCACTTCTGTTTTGAATAGTCTGCAGTGAAGTTATACatgaaaatccttttttttattttggaattaaGTAATTTGGAaaatttttatgcatttaatgTGCATAGTAATCTGGCTATTAAGAGTGTATAAGGCACCAGGTCAGAAAGTATTCAATTATCATTGTTACTCAGTTGTGTCAATTTGTGAACAGTCAGTACACTTCAGTGATTTCCCTCCTCAAACACGCTTCCAAAACCTTCAAGGTAATTAACAGGTGGCTTAAGTAATTTGTGTTTGAATAGTGAAATCTCCAAACAGTCCAAGACAGTGGCTTTTGAGACTGTCATACGTTTTTACCGtatcaaaaacacacagaaaagaaaTAGCCTTTGGAGGTAGTATGATTTTGCACCAGGTTGCCTGCCAGAGAAATGTTAGCCTTGGCTTAGTGCCCCTCGGTGCTTTAATGCCAAGTCATTAATACTGATGGAAGTTAAGAAGCACAGTGCACACACTGACAGAGGCAGATCTCAGCTGCTTTatcttcagtaaaataaataatcgaaaatagaaatgaaataaaatggaaaCAGCTTCAGAATTTTtatgaaattaaaatgttaagcaCCATTTTGACAAGGTTCCAGCAGGGTTATATTCCAGGAAGGAggttatattgatatattggtTTGCATCAAAACAGTATCGGAACTTTTCTCACATAATATTCCCAGATAGATGAATAATAACAtaatggaaatgttaaaaacattcttaaaagtaaaactttttacattgacacaAATTATGTTTAAGCAGTTTTactaaaaccatttaaaaaaatgttaaataaaaaacataagaacatccagaaaacttgacagagtAACCGTTCTAAAGACATTAATTGCAACATTCAGAAAACGCTCTaataaccaacatttttttagctgtgtgtcTCCTCCactgaaatgttattttaatctcaacatactattattttaatttatcacCCCTTTGgtcaaatgaaaaagaaaaaaaaaacagccagatTAAGGCGATTCAGGAGAATCATTGGAATCAAGTGAGAAGCTCTATTGAAGTTTTAACTTTGGCTTTTGATGAAAAGCTGCCTTAATGAGTCTGGAAATTAGAGAAACTTGATTTAAGAATCTTGAGTAAACTTAGCCTCAGTGACTCAGGGGGTTTATACCTGTGGATCTTCTTAGAACAAAATCGGCTTCATTCCTGAATCAGTCCATAGCTACACCCTGCAGAGGCTCTTGATCTGTTGACTCCTGTTTCCTTGCGAATTGTCGTTTCCTTGTAGTCTCAGGTCATATTCTCCAGACCGAAGCTCTTGGCACTTAATTTAAGTGTTTGTCATAAATTATGAATTGTGTTAATGAATGATATGGAGTAATATGGACACAGTGCAAATATGTGGGCAAAACTTTACAGTAAGTTACTTTACAGTACTTAATGtctcaaataattattaattgatacTAATTAAGACATTATGAAACATTAATATTAACGGTTAATGGTTAAGaatgctttaaataataatgaatcaaGACATTAGTTAAGCatttataatgatttaaaataatgtctTAATTGTTGTCAGCTAGGGGTGGAACAAAATATTggtattgtaatatattgtatcgtttttgttctttgatatgtgATGTCatatatatgtcatatataGATATTTCTAGTGAAACATATGTGCTCTAAATTCCCTAAGATTAGCCCCTCAATTAGACTTACTGAAGTGAAATGCCCTGTGATTTCCCCCCTTCTGTctgttaataattagttgagacattctgtaaGTCTTTGTaagtactgataattaatgtacccttattgcaAAGGGTTATTgatatgtgtttattagttcAGTCATATATATTTgccaaatcaataaaacaggCTGTTTCAGCTTGGCTGTTTCAGGTTTATCAGTCAGACCAAAGatccgtttttttttctacGTTCTGTCCAAAGCAGAAAAGTCCGTAATCTCTGTTGTTATTCATGTCTGTGTATTATGCATCTGAAGCCCTtgtagatttatatattttgttctttttaaagtCCAGAACAAATATTACAGATCATGATTTTCAGGCCAAACTGCATCCTACTTCAGTGAAACTAGAATTGATGCTCACTGCACTCAGCACCCGCAGATAAACTGATCTGACTCCACCTCGCAGACCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU300062 lncRNA upstream 55609 33149330 ~ 33158040 (+) True G221168
TU300061 lncRNA upstream 55609 33153108 ~ 33158040 (+) False G221168
TU300059 lncRNA upstream 57196 33145915 ~ 33156453 (+) False G221168
TU300065 lncRNA upstream 58160 33152456 ~ 33155489 (+) False G221169
TU300068 lncRNA upstream 58160 33152456 ~ 33155489 (+) True G221169
TU300107 lncRNA downstream 13924 33246592 ~ 33250370 (+) True G221198
TU300125 lncRNA downstream 54751 33287419 ~ 33289873 (+) True G221216
TU300126 lncRNA downstream 57866 33290534 ~ 33312603 (+) True G221217
TU300175 lncRNA downstream 120073 33352741 ~ 33423199 (+) True G221259
XR_002651980.1 lncRNA downstream 138838 33371506 ~ 33374468 (+) True LOC111196033
XM_022685010.1 mRNA upstream 2912 33109959 ~ 33210737 (+) True acoxl
XM_022685007.1 mRNA upstream 240081 32946416 ~ 32973568 (+) True fbln7
XM_022685005.1 mRNA upstream 292071 32911781 ~ 32921578 (+) True LOC111196032
XM_022685006.1 mRNA upstream 292071 32911781 ~ 32921578 (+) False LOC111196032
XM_007237268.3 mRNA upstream 308186 32779544 ~ 32905463 (+) True itga9
XM_007228747.3 mRNA downstream 222108 33454776 ~ 33458782 (+) True LOC103021727
XM_022684765.1 mRNA downstream 1561415 34794083 ~ 34829457 (+) True LOC103021397
XM_007247598.3 mRNA downstream 1611826 34844494 ~ 34858483 (+) True l2hgdh
XM_007247596.3 mRNA downstream 1630470 34863138 ~ 34892584 (+) True sos2
XM_007247593.3 mRNA downstream 1693616 34926284 ~ 34932635 (+) True cdkn3
XR_002651979.1 other upstream 536364 32613474 ~ 32677285 (+) False LOC103038412
TU299723 other upstream 635097 32535056 ~ 32578552 (+) False LOC103027057
TU299570 other upstream 1475453 31736897 ~ 31738196 (+) True G220800
trnak-cuu_13 other upstream 1785337 31428240 ~ 31428312 (+) True trnak-cuu_13
trnag-gcc_5 other upstream 1790827 31422752 ~ 31422822 (+) True trnag-gcc_5
TU300211 other downstream 211449 33444117 ~ 33444721 (+) True G221292
TU300330 other downstream 929913 34162581 ~ 34183237 (+) True G221390
TU300434 other downstream 1754360 34987028 ~ 34997044 (+) True synj2bp
TU300438 other downstream 1785785 35018453 ~ 35025598 (+) True srsf5
XR_002651984.1 other downstream 2637350 35870018 ~ 35888815 (+) True gclc

Expression Profile