RNA id: TU300231


Basic Information

Item Value
RNA id TU300231
length 1076
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id G221308
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 33492909 ~ 33494218 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTTTTGGATAAATTATTATGTATGAtctttgcaatatattgaaGCACATTTGATTTGAACAGGAAAATATGCTCACCTCATAAAACTCTTCAAAGCGACTTGGAGTAGGCGTTGCTTGAGTGCCATCTGTGTGGGTCAGAGCCTTCTTTGTGTGCTTTTGAACAGGGGTTGAGGAGGCAACAGTTTGCAGGCAGGAAAACACCACCCTGCTTAAGCAAAAGTCTCTGGATAAAGACCCAACAGACCTCCCAGATTCCCTTAGCATCCTTTCTGCTTTTTTGCACCTCTGAAGAGCCCTTGCATCTTGGCAGATGATTTTGCGCCATGTCCTGCTCACCTTTCTGCAGCTAATCAGGTCACAATCCCCAAGCAGGCCGAGAATCCTGGTGAGGATATGCTTCATGTCTTTCTTCATGAGGCCACAGAGAATGTCCACGTGATCCAGCCCCATCTTTCCTCCAATAACGTTATGGAGGCTGTAGTTTTCAGCAACCTTATTAATGACAGTCCAATCATAGCTCTGACTTTTTCTAAAGCTTTCTGCCAGAGCATTACACACCTCCTCCTGGAACTTGAGTACAGGAAGGCAGGAGGAACGAGAGTCAGAATGGGTGTCCGAggacactgtagagtctcttaGCTCTAGGGACCTTTCTGTAGATGTTTCTGAATCTACATGTTCTAGCTGGCTGTTGTGGAGGGAGAGGTATCCGCTGTCCTCTGCCAAACTGGAACTGCTCAGAGCCACCTCGTCATCAGACTGTAGGCCTGAGGAAAACAGTGTTTCCCTGCAGTTCTCCTTATTGTGAGAGCCTCTCAGATTGTCGTCTGTGTGGCAGGAGACAACGGGCACAGCTGGCTCTAGGCTAGCAGCACTGTCTTCTTGTGGTACCGTCTGACCCTTTAGCTCCACTGGAACAGTCACTTTTTCCTTCTCTGTGAAGAGAGAGCGAGCTGAACCTCTTGTCCGAGCAAGGCACTTCATGATTGTGGATTCTTTGGTCCAGAAAAACTAGAAAACAATGAATAATAGGAGAAAAATTAGGGGGGTGCCTTCTAAATGAGAGTTAGAGACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU300221 lncRNA upstream 29517 33463184 ~ 33463392 (+) True G221298
TU300175 lncRNA upstream 69710 33352741 ~ 33423199 (+) True G221259
XR_002651980.1 lncRNA upstream 118441 33371506 ~ 33374468 (+) True LOC111196033
TU300181 lncRNA upstream 118609 33371824 ~ 33374300 (+) False LOC111196033
TU300126 lncRNA upstream 180306 33290534 ~ 33312603 (+) True G221217
TU300238 lncRNA downstream 21434 33515652 ~ 33516194 (+) True G221315
TU300249 lncRNA downstream 135228 33629446 ~ 33629680 (+) True G221321
TU300252 lncRNA downstream 137868 33632086 ~ 33636648 (+) True G221324
TU300253 lncRNA downstream 137868 33632086 ~ 33636648 (+) False G221324
TU300289 lncRNA downstream 335661 33829879 ~ 33830186 (+) True G221354
XM_007228747.3 mRNA upstream 34127 33454776 ~ 33458782 (+) True LOC103021727
XM_007228745.3 mRNA upstream 260118 33213628 ~ 33232791 (+) True bcl2l11
XM_022685010.1 mRNA upstream 282172 33109959 ~ 33210737 (+) True acoxl
XM_022685007.1 mRNA upstream 519341 32946416 ~ 32973568 (+) True fbln7
XM_022685006.1 mRNA upstream 571331 32911781 ~ 32921578 (+) False LOC111196032
XM_022684765.1 mRNA downstream 1299865 34794083 ~ 34829457 (+) True LOC103021397
XM_007247598.3 mRNA downstream 1350276 34844494 ~ 34858483 (+) True l2hgdh
XM_007247596.3 mRNA downstream 1368920 34863138 ~ 34892584 (+) True sos2
XM_007247593.3 mRNA downstream 1432066 34926284 ~ 34932635 (+) True cdkn3
XM_007247590.3 mRNA downstream 1475006 34969224 ~ 34979881 (+) True LOC103035732
TU300211 other upstream 48188 33444117 ~ 33444721 (+) True G221292
XR_002651979.1 other upstream 815624 32613474 ~ 32677285 (+) False LOC103038412
TU299723 other upstream 914357 32535056 ~ 32578552 (+) False LOC103027057
TU299570 other upstream 1754713 31736897 ~ 31738196 (+) True G220800
trnak-cuu_13 other upstream 2064597 31428240 ~ 31428312 (+) True trnak-cuu_13
TU300330 other downstream 668363 34162581 ~ 34183237 (+) True G221390
TU300434 other downstream 1492810 34987028 ~ 34997044 (+) True synj2bp
TU300438 other downstream 1524235 35018453 ~ 35025598 (+) True srsf5
XR_002651984.1 other downstream 2375800 35870018 ~ 35888815 (+) True gclc
XR_002651983.1 other downstream 2376842 35871060 ~ 35888815 (+) False gclc

Expression Profile