RNA id: TU300316


Basic Information

Item Value
RNA id TU300316
length 2937
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G221377
representative False

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 34013515 ~ 34017143 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AATAAAGCTATATAGacaaacaaatgagacatgatGTACAATGTGTTTGTTCCATTGGGTTTAATTGGAAATGTTTCCTTCATTAACAAGCCTGGagtttactataaaaaaaaagtaaatgatcaGTATTTAAGCAGAGTTTGCACGGGTGCTCATGTCTGACATCAGTTTTGGACCATTTTCACaatgacaaacacacacacacaccagacacacacgccagtcacacacaccacagggcTTCACAGCACTGGCACGAACATGACTAATCAGCGATATGTCAAGCATCACATCATGATTAGTGGTATTATGTAGTGCAGCCATCTGTAGCACTGAGCTGATCAATGGCTTGGAGCAAGAGCACAGCTGCAGTGAAGCTGAACCCCAACACCAGCACACAGTGGCTCCACCGCTCTTCAGTTCTTCACTGGTTTGCTGGTCTTCAGTTTGGGGGACTTGAACTGCACAGCTGATGGTTCACTCGTAGACTCGTGCTGTTGTTACTGCTCCTGGACTTGGATTCACCAGTAACCAACAAAAAGCAGTTAATATGTAGCATATTGTCAGTTAGATGAACAATAATTCAATAACTCCCTGTATttgaggaaaataaaataataataataataatataagtaatTGTGGTGGTGTTtcaattttgttattttactgaATGCATGAAATGCGTCAATTATTGTCTGTAGTAACTGACTGTGTGCTACAGTGATGCAGTGAACGGGTTTAGGTTGAAAAACGCTGGATTGCTACTCTAATGCCTGgtttacactacacaactttttgagtGGTCAAATCATTGTGTTGGGCTGTTCACACTATAAAACTGGTTGAGCTGTAAACTGGGTGAGTCTTTAAATTGTAGTGAGTTTCACACTAAGTGACTGAACAACAACAGACTCACCAATTACTGGAAAATTGTAGACTCATCTGGCTGCCATGCAGAAGTTACGCTGGTTGGACACATGGTTCTCTCTTTACATGATGCTGGtctagatattaaacctgctagatgtTGGTGATCACTTGTCGGCAACAGCTCATCAAGTCATTATGTTGTTCTGTTCAAACTACACGACAGGTGTGGTTCAGGTGTAATCACAAGTCTTTCAGTTGTTGCAACTTTCAGTTACAAAAATTTACACTGTGGGAAATCGCAGTCATGTGGCTGCTCTACAAAAGCAAGTTTGGAATTGAGAACATGTGAGAACTAGCAATGCCGTGCAGATTTTGCGTTGGTTGGACACATGGCTCTCTCTCTGCACGATGCCATTGGCTGTAAGTAGTCACTGTTCTTGACTGCTAGATGTTTGCCCAGTTGCCTGTGACTCTAGTGCAATCACTTATTGGCAACAGCTCATCAAGTCTTGGTCGTGCTGTTCACACAACACAACTGGCTAAGCTCTAATCATGAGTCTTTCAATTGGTGTGGCTTTCCAACTACTGAACGGCGACACAGGATCACCAGTTAcataagttattttactttgGGAAATTGCAGACTCATCTGGCTACTCTCCAAAAGCATGTTTGGCTTTAAGAACATGCGAAAACTAccaatgccatgcacaaattcCGATAATTGGATATATGgttcggtaacactttaattGGATGGTCCAATTGATGGCTTTTTGATGCtcaacattcaactaacattcaactacatatctattaaatgcaaattaactaaaatgtgaaagtaaattattctctattgaatataaccctacattcaactcttatccaaacgcttatctacattttttaggattgggtttaggtttagattttaagcttatgttaaggttagggtaaaggttaggtgtatggttagattttagggttgattaagggttaaggtaagggttaggtgtagggttagattctgttttgaattatttacattcaacatagggttaagttaaatttaatggacattcagttcagttttagttgaatgtcagttgagcatcaacaaggccataaaatggaccatccaagtaaagtgttacctatgGTTCTTTCTCTATGCCTTTATGCCAATCCCATTGGCAGCGGGTAGTCACGGTTCTTGACTCACAGTCAGTGACTGGtctagatattaaacctgctagatgtTTGCTGGGCGACTGTGATTCGTCAGCGATGGTTTGTCAGGTGTCTTTCAGCAGTTTACAGTTAACTGATTGGTGATTTGACTTTGAAAAACcggctaaaatcgtgtagtgtaAACTAGGCATCCAAATCTGGGACAATTCAAACATCCAGCAAGTTGACTGAGGATGCGTAAGGCTAGTTGATGCTGCTACATGATAAACGACTCTTATACTACATACGGAGACATTTCACTCTGTATATTAGAATAAGTGTTTTTACATgtctataagtgtgtgtgtctatgtgggCAGCAACATGGTGAGGGTTGACAGTGAGGTTTATTAGACAGGGGAAACTCATGAGCATGAGTCTCGTGAGCATGTGGGATATAAGCTTTTGTATGTATGTACCTTGGCCTATTGCATATCAATCACTCAAACATCGTTAATGtactgaacaaaaaataaagcctaataaacATGCAGAGAGGAAATACAACAGACAGAAATCTGAAGGGACAGACACAGAGATGGAGGAAGACAGCAACAGCATTGCGTGGAAGAAAGAAGGCAGAAAAGCAGAGGCAGTGAGGATTAGATGGACAATCATTCTGAAGGACAGAGCAGAGACTGTTGTTGTGGAGCTGGGTGATGCAGTGCTTCAGGCGCGGTACAGCAGAATCCTCTCGGCGCAGGTCTGGCCCACCAGGCTGGCGTAGTGCTCCACCTCTTTTTCATCACTAGAGCCCTTCCGTTTCCGGGCGTAGGCAGCGTAGGGCATGACAGTCCTCCTGTGCAGCACCAGAGCCCTGCTCAAGTCTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU300307 lncRNA upstream 70964 33942227 ~ 33942551 (+) True G221369
TU300296 lncRNA upstream 155981 33854494 ~ 33857534 (+) True G221361
TU300286 lncRNA upstream 181221 33830497 ~ 33832294 (+) True G221351
TU300289 lncRNA upstream 183329 33829879 ~ 33830186 (+) True G221354
TU300253 lncRNA upstream 376867 33632086 ~ 33636648 (+) False G221324
TU300391 lncRNA downstream 812950 34830093 ~ 34835860 (+) True G221419
TU300392 lncRNA downstream 813374 34830517 ~ 34835860 (+) False G221419
TU300395 lncRNA downstream 819818 34836961 ~ 34837352 (+) True G221422
TU300413 lncRNA downstream 878318 34895461 ~ 34898316 (+) True G221438
TU300393 lncRNA downstream 887635 34904778 ~ 34905637 (+) True G221420
XM_007228747.3 mRNA upstream 554733 33454776 ~ 33458782 (+) True LOC103021727
XM_007228745.3 mRNA upstream 780724 33213628 ~ 33232791 (+) True bcl2l11
XM_022685010.1 mRNA upstream 802778 33109959 ~ 33210737 (+) True acoxl
XM_022685007.1 mRNA upstream 1039947 32946416 ~ 32973568 (+) True fbln7
XM_022685006.1 mRNA upstream 1091937 32911781 ~ 32921578 (+) False LOC111196032
XM_022684765.1 mRNA downstream 776940 34794083 ~ 34829457 (+) True LOC103021397
XM_007247598.3 mRNA downstream 827351 34844494 ~ 34858483 (+) True l2hgdh
XM_007247596.3 mRNA downstream 845995 34863138 ~ 34892584 (+) True sos2
XM_007247593.3 mRNA downstream 909141 34926284 ~ 34932635 (+) True cdkn3
XM_007247590.3 mRNA downstream 952081 34969224 ~ 34979881 (+) True LOC103035732
TU300211 other upstream 568794 33444117 ~ 33444721 (+) True G221292
XR_002651979.1 other upstream 1336230 32613474 ~ 32677285 (+) False LOC103038412
TU299723 other upstream 1434963 32535056 ~ 32578552 (+) False LOC103027057
TU299570 other upstream 2275319 31736897 ~ 31738196 (+) True G220800
trnak-cuu_13 other upstream 2585203 31428240 ~ 31428312 (+) True trnak-cuu_13
TU300330 other downstream 145438 34162581 ~ 34183237 (+) True G221390
TU300434 other downstream 969885 34987028 ~ 34997044 (+) True synj2bp
TU300438 other downstream 1001310 35018453 ~ 35025598 (+) True srsf5
XR_002651984.1 other downstream 1852875 35870018 ~ 35888815 (+) True gclc
XR_002651983.1 other downstream 1853917 35871060 ~ 35888815 (+) False gclc

Expression Profile