RNA id: TU300434


Basic Information

Item Value
RNA id TU300434
length 3949
RNA type TUCP
GC content 0.41
exon number 4
gene id synj2bp
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 34986999 ~ 34997044 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cacttcaGAAGGAGGCGCTGCACGAGTTCACCTTCAGCCCTTAAATCAAATCTTATGAAACTTTACTGAAGCTTTTGGAGGATTAAAACATCATGAACGGCTCTGCTCTCAGGACCGCGGCGGTGCTGGACATCCAGCTCAGGCGGGGACCAGCGGgTTTGGGGTTTAATATAGTGGGCGGAGTCGATCAGCAGTACTTGCTGGAAGACAGCAGTATCTATGTGGCCAAGATCAAAGAGAACGGAGCGGCAGCACTGGATGGGCGACTGCAGGAGGGCGACAAAATACTAGCGattaATGGACATAAACTGGAAAATCTGACCCACGGCGCTGCGGTGGAACTGTTTCGGTCAGCAGGAGAGGACGTCCAACTACAAGTTCAAAAGAGACTCCCAACCACCTCAAACGGTCCTGCAAATCCTCGCCCTGATCGAGATTCATCCCAGGCTGTCGGAGCTGTGACGATTGCCATTATGGTTGCAGTAGCTGCAATTGGGTTCATTATCTACAAACGATACCCCAGACGACCATTTTAGCCCTTTTCCAGTTGTACATATTTTAAAGACAAACCttatgaactgttttttttttttttttgctgagggCCAAAAAAAGGAATTGCAGTGACAAGATTAATGGAAACAGAGCTACAGGTTAGCTAAATGTTTGCCTTCaacttaaaattaatacaattattacagttgtaGCTACATTCTGAGCTGTAATCATATATGCATAACCAAAACTCAAAATCTGTTGTGTTGTATAAAGCTCAGTGGAGTTAGAGATTATGTTGAATAAGAGATCTTGAATAGAGGGAAGCTGCTGAGAACGAAACCTGCTGAGTGACCAAAGAAAGAAGTGCTGTTCCTCCGAAACTGTAGAGGGCGCTGCAAAACCTTCCAACTTGAAGCTGGTTCTTTTTCTCCTGACCGGACACTGTCAGGAGACACTTGGGATGTAAACACAACATAGAGTGGCTGGTAGATGAACGACGGTCAGCTTTTTGAAAAGTTTTGCTAATGCCATTATGCAAAATGAAGCATGTGGTTTTGGCCCTTTACAAACCGGGAAGAccctgtgcatgtgtgtgtttgtgtatgtgtatgtaagtTCCTCTTGCTCACTGGTTGTTGCATAGGCACACGTGTGTGCACTAAATATGGATGTTGGTCCTTGTGTAGTGGTCTTGGCAGGAaggaagtgtttgtgtgtgttgttttttgacGATTTTGTCCAGTTTTAGGAATTCACCATTCTCCTCTTACAATCAGGTACTTAGTTAAGGGGGGAGGCGTTctctaaatgtttaaattgaCACTCTAGCACGCTAGCATTCAATCAAATCTGCaaatctttaaaatgtttttgtttggaaGGGTGATCTTTATATGGGAAGTAAGGATACACAGCCTAAAAAGGAACGATTGCAtaggtctcttttttttttctttaacaggCCTCTGAAGTGGTCAGTCATATTGTGGTTAGCATGGTAGCATGTAGTTAGCAGCGGGAGCTCATTGTTTCACTCTacgctattttttttttatgaatgctGTGGTAAACGAACATGGTACATTTACCGTAGTCATGAATATACGCTTCATCAGGGGTCACCAATCTTATCTGTAAGGGGCAGAAGTTACTGCAGGTTTTAAGTCCAACCAAGCTGAAGCACACCCTGTATAGTTAACCATATGTTATAAAGGCTGAGACTGACCGAACAAGTAGAATcaggtgtgcttttgctttactggaataaaaaaaactccaccCACACCATTTTGGATAAGATTGTTGATACTTGCACTGTTTTATCAAAAGTGTCCGCTCCCCTGCATTGtgttctactgttcttgagctgatCTGAATCTACATTAAGCTTGGAGGTCTGTAGAGATTGACAGGCACTGATGGTTCACTCTGGagtatttagtagtgaggaaatttgaTGACTGGATGTAGTAAACAGGTGGCGTTCTATCACAGAACCACACTGGAATTCACTGTTCTCCTAAGAGTGACTCAttctttcacattttttgtagaagcagtctgcatgatcaggtgcttggttttatacacctgtggccaagTTCAATGATCTGGATGGCTGAGTGGATACTTTTGgtaaataatgtgtatttttccTCCTCAATCTTTCTGGATACTTATAGAATTAAATTAATACTACAAGAAATCACAGTATTTCTCATCACCAAGGTGATTTCCTAAAACTGACCCTCACTGAAAGTAACCCAAACAAATTGGCTATTTTTTTGTCGAAGATGTAAGTGTGTCTGTAAGTTTTAGCTGCACAAATTTAACATCTTACAATATctttattaaacatgaaagGATGGATTGTAGCTCTCTCACCTCCAAATCACCCAGTGGGCCAGTTTACCTGTGTTTTACTGCAAGATTGGGCTTCTGTCATAAATGTATACCATCATGTAGTTCTCTGTAACCAGCAGCAAGTATGGGACAATGTTTGGCTCCAATTtgggttggtttagtttagtagCAGAATTAGTGACATAATTTTCACTCTTTGATGAGCTCCTAGATCAAACGACAATTTTGGAACATATTTGTTTACCACAGGTTTAGATAGCAGATTGTTCAGTTTTTTCTTCATGCAGAAGAATGACTTGGGGCGTTTTCACAATGGAACGTTCAGTCAAggtttgcatgtttgtcataCTGTATACTGCACATTTGTTTGTAGTCTTATTATACTTCACACTGATAGGTTTGTAGATTGTTGCGAGTTCGGCGAGTTGCTTTTTTCAGGTGTTGTGCTAAATGCTAGCTCTCTAGAATCTGTTagaatctgactccccttgGCAGCAGAAtgagttaaatatatatgtctgtttatACATTACTAGGGTTAATCTAcaattacagtagatacaagaATCAACAGTGTAAGCGTTTACATTCATATAATTTATGTGATGCACCTGCGTGTCAACGGGAGTCGGACTTAAGCACAACAtcgcttctttttcttctgttatGTTTAAGGATGATGGTAGCATgcctcagcttcctgtaatctCAAAGTCCGAACTATCTAGAAAAGTGCACTTTTAACACTGCAGGTGATTCAGACCATTGTTAGGAGATTCAAACCAAGACCAGCTCTTGTGGTCCAACCAAACTCTGGTCTTTTGGTCCAGACTGTGGCTCACGGCCCAAACAAGGCACTCACGAGTTTATAGTTATAGTACACATCAGAATGACCTACGGCTCCAGAGgtctgttattatattattagcaGTTGTTTTTCTGGAGCTGATCTGTTTTACTCAGGGCTGCCCTCTTTCCCGGGCCAATCTTGCAGCTAATCGTGAAGGTGGCATGTAAGGCCCAGTGCTCCAGTATCTGTGTTTAattttcagtgtaattaatTTCTAGTGTAATTAATTAagtgtttatgtgtatgtacaTGTGTTCTGGAGGTTCTGCCGTTTGGCCAAATGGAAGAACCTGCTTTGAAAGCCTTACAGCATGAATGAAATGCATTTATTTCTGTCCTGTCACTACCAAGCTAATGTAGAATTCGCACGAGCATCACCCTTCGAATAAACCATTTCTTACAAAAGTCGTGTGCCGTAAACTTTCCATGTGGGGTTTAATTCAGTGTTGGACAGCACTGATGCTCATGAAACCTTGCATGTGACTgtttgtgtacgtgtgtgtgtttgtgtaagtatGTATTGACATGATTCCTCACACCCACGCAAAGTAAATGCACCCTTTTCCCCtcactggacaaaaaaaaaaaagcacttcgAATGCAGGGCACAGTGTCACCAAGACTGAGTTTTCAAGTCTGGATCACAAGTGAAAGTTTGAAGAATTAATTTGattgtgaaagtgttaaatgtgacaattgtaaataaatgctaatgTCGGAGGCCTTGATGTGAGAGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU300428 lncRNA upstream 4667 34980019 ~ 34982361 (+) True G221447
TU300410 lncRNA upstream 20801 34957895 ~ 34966227 (+) True G221436
TU300412 lncRNA upstream 53743 34932980 ~ 34933285 (+) True G221437
TU300421 lncRNA upstream 65379 34921337 ~ 34921649 (+) True G221446
TU300420 lncRNA upstream 68175 34918571 ~ 34918853 (+) True G221445
TU300515 lncRNA downstream 56414 35053458 ~ 35054559 (+) True G221517
XR_002651982.1 lncRNA downstream 138835 35135879 ~ 35144922 (+) True LOC111196036
TU300523 lncRNA downstream 202606 35199650 ~ 35243951 (+) True G221522
TU300526 lncRNA downstream 215925 35212969 ~ 35218227 (+) False LOC103031497
TU300531 lncRNA downstream 312458 35309502 ~ 35315890 (+) True G221527
XM_007247590.3 mRNA upstream 7147 34969224 ~ 34979881 (+) True LOC103035732
XM_022685019.1 mRNA upstream 7147 34969224 ~ 34979881 (+) False LOC103035732
XM_007247593.3 mRNA upstream 54393 34926284 ~ 34932635 (+) True cdkn3
XM_007247596.3 mRNA upstream 94444 34863138 ~ 34892584 (+) True sos2
XM_007247598.3 mRNA upstream 128545 34844494 ~ 34858483 (+) True l2hgdh
XM_007247588.3 mRNA downstream 5161 35002205 ~ 35014129 (+) True LOC103035102
XM_007247586.3 mRNA downstream 21398 35018442 ~ 35025598 (+) False srsf5
XM_007247584.3 mRNA downstream 39588 35036632 ~ 35108241 (+) True pacs2
XM_015605401.2 mRNA downstream 39588 35036632 ~ 35108241 (+) False pacs2
XM_007247585.3 mRNA downstream 39588 35036632 ~ 35108241 (+) False pacs2
TU300330 other upstream 803791 34162581 ~ 34183237 (+) True G221390
TU300211 other upstream 1542307 33444117 ~ 33444721 (+) True G221292
XR_002651979.1 other upstream 2309743 32613474 ~ 32677285 (+) False LOC103038412
TU299723 other upstream 2408476 32535056 ~ 32578552 (+) False LOC103027057
TU299570 other upstream 3248832 31736897 ~ 31738196 (+) True G220800
TU300438 other downstream 21409 35018453 ~ 35025598 (+) True srsf5
XR_002651984.1 other downstream 872974 35870018 ~ 35888815 (+) True gclc
XR_002651983.1 other downstream 874016 35871060 ~ 35888815 (+) False gclc
TU300860 other downstream 972945 35969989 ~ 35972354 (+) True G221728
TU300883 other downstream 1057102 36054146 ~ 36056690 (+) False G221737

Expression Profile