RNA id: XM_007247586.3


Basic Information

Item Value
RNA id XM_007247586.3
length 1815
RNA type mRNA
GC content 0.45
exon number 8
gene id srsf5
representative False

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 35018442 ~ 35025598 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aCCCGATACTATAAAATCCCTCCGCAAGCCGCTTCACCCTCATCTCCTGTTCATTCGCCATTTTGTTACAGCTCAGTTGATCAGACTTCCTTGAATTTGCACCATGAGCGGATGTCGAGTGTTCATTGGCCGCCTGAGCCCCCACGCCCGGGAAAGAGACGTGGAGAAGTTCTTCAAGGGCTATGGACGCATCAGAGagattaatctgaaaaatggaTTTGGATTTGTGGAGTTTGATGACCACAGAGATGCAGATGATGCCGTGTACGAGCTGAACGGAAAGGAGCTTTGCAGTGAGAGGGTGACCATTGAGCATGCTCGATCTCGCCGTGGCAGAGGAGGTGGTCCTGGAATGGGTGGGGGACGTTTCTCTCCACGCTTTGGAGGCTACCGTCAGTCACGTAGTGCGGGGTCCAGGTATGGTCCTCCTGTTCGCACAGAGCACCGAATCGTTGTGGAGAATCTGTCTTCCCGGATCAGCTGGCAGGACCTGAAAGACTTGATGAGAAAAGTGGGTGATGTGACGTTTGTGGACGCCCACAGGACCAACAAGAACGAAGGggtTGTTGAGTTTGCCAGTCACAGCGACATGAAAAATGCCATTGAGAAGCTAGATGGCACAGACCTGAACGGCCGCAAGATCAAATTGTTTGAGGACCGCAAAAGGAACCGCAGCCGAAGCCGTTCCCGCAGCTCCTCCCGGTCACGCTCCCGTTCCCGCTCCAAATCTCCCAGCCGTAGCCGCAGCCGTGAGAGCAAACGCGAGAGCAAACGTTCTCGCAGCCGCTCTCGCTCTGCCAGCCGGACTCCAGAAAAAAAGCAGTCAGCTGCCTCTCGCTCCAGATCACCTTCGCCATCTTCTCCACCTCAGAGGAAACAGTCCCGCTCTCGTTCTCGTTCTCGCTCTGCGTCCACCGAGAGCCAACACTGAGATTGAACttgtgtgtataattgtgtgttttgtctaaggctgaatgtgtttaaaaatggcAGAAGCTTAATCagttaaacatgtttttgtgGCAAAAGGAATAGTTCAGCCAAAGATGTTTGCGGAGAACTGCagcattttacctttttatctGTCTGCTGTGTCTGTAGTGTATGGTTGTTTACCACTGAATGTCTGAAAAAAGCAACATCCTACTGACTCTAAACTCATTTAAAGTAGACTCCATTGGGCAGCTACTTAAATGGAACATCAGAACATGTCAAACCTATCTGGTAAACTACCCAAAAGCTACAAATGTGGCAGAGATATGGACTGTTGCTTAAAGCAGGTTGTCCGCTTAGTTCTACTTATTGATGGTCGTTTCAGTTTGTTGTCTGCATGTTTGGACTATTCCTTTTACTATCATTATGTAAacgcttttattttattatttttttcctccccaATCAAACATGCTTCATATTGGTCAGTGCCTAATTTTCCTGAATGATGCAATAATTGCTTCTCCCCCCCCCAGTCCTTTTGATTAGCCCCTGctctttctgcttgttttgtagTAGTGACGCACttgatgaataataataaaccacATTTGTAATAGTTGGTACAGAAATTTCACTGGACCAtgattgcatttatttttttttaatttctgaattGGCCAAACTGTCCTTTTTAACTGCGACACCCAGAAGCAGGCACAGGACTGGTTGATATGTTTGcgctttctcctttttttttttttttttttttttttaaatggagttCTTGTGCTGTTCTTGATTTCGGAGAAAGTTTTTTGAGGTGTTCTATGAACTAACTGTGAATACTGatttaatacagaaataaactataaaaccaaa

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU300428 lncRNA upstream 36081 34980019 ~ 34982361 (+) True G221447
TU300410 lncRNA upstream 52215 34957895 ~ 34966227 (+) True G221436
TU300412 lncRNA upstream 85157 34932980 ~ 34933285 (+) True G221437
TU300421 lncRNA upstream 96793 34921337 ~ 34921649 (+) True G221446
TU300420 lncRNA upstream 99589 34918571 ~ 34918853 (+) True G221445
TU300515 lncRNA downstream 27860 35053458 ~ 35054559 (+) True G221517
XR_002651982.1 lncRNA downstream 110281 35135879 ~ 35144922 (+) True LOC111196036
TU300523 lncRNA downstream 174052 35199650 ~ 35243951 (+) True G221522
TU300526 lncRNA downstream 187371 35212969 ~ 35218227 (+) False LOC103031497
TU300531 lncRNA downstream 283904 35309502 ~ 35315890 (+) True G221527
XM_007247588.3 mRNA upstream 4313 35002205 ~ 35014129 (+) True LOC103035102
XM_007247587.3 mRNA upstream 21731 34986999 ~ 34996711 (+) False synj2bp
XM_007247590.3 mRNA upstream 38561 34969224 ~ 34979881 (+) True LOC103035732
XM_022685019.1 mRNA upstream 38561 34969224 ~ 34979881 (+) False LOC103035732
XM_007247593.3 mRNA upstream 85807 34926284 ~ 34932635 (+) True cdkn3
XM_007247584.3 mRNA downstream 11034 35036632 ~ 35108241 (+) True pacs2
XM_015605401.2 mRNA downstream 11034 35036632 ~ 35108241 (+) False pacs2
XM_007247585.3 mRNA downstream 11034 35036632 ~ 35108241 (+) False pacs2
XM_022685022.1 mRNA downstream 90050 35115648 ~ 35133993 (+) True dcaf5
XM_007247575.3 mRNA downstream 126732 35152330 ~ 35208826 (+) True actn1
TU300434 other upstream 21398 34987028 ~ 34997044 (+) True synj2bp
TU300330 other upstream 835205 34162581 ~ 34183237 (+) True G221390
TU300211 other upstream 1573721 33444117 ~ 33444721 (+) True G221292
XR_002651979.1 other upstream 2341157 32613474 ~ 32677285 (+) False LOC103038412
TU299723 other upstream 2439890 32535056 ~ 32578552 (+) False LOC103027057
XR_002651984.1 other downstream 844420 35870018 ~ 35888815 (+) True gclc
XR_002651983.1 other downstream 845462 35871060 ~ 35888815 (+) False gclc
TU300860 other downstream 944391 35969989 ~ 35972354 (+) True G221728
TU300883 other downstream 1028548 36054146 ~ 36056690 (+) False G221737
TU300881 other downstream 1029039 36054637 ~ 36056690 (+) False G221737

Expression Profile