RNA id: TU301417


Basic Information

Item Value
RNA id TU301417
length 622
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G222138
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 37162669 ~ 37163290 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGTAAATcaatttatatacattattgaatcattaacagtAGATACAGACTCATTTACAGCGATTATTGATTACTGATTTATAGTACATGCAAAATAATTTGTAGCAGTGACTGAATCATGCATAGTAGATACAAAATTATAATTAGCAGGTACTACATTATTATAGCAGGTACTGAATTATTTACAGTAGTTACTGAAACAAGGTTCTGCAGTACAGAGGGGCAAAAGGGGAATCTAAAGTTATCATTAATAcacattctcattaatatttgtttatttgtattatttactacaatgtagattaatattacagttttaaaatttatgaagaaacacatatgcAATTGGGTATTagagaaaaaagtgtttggcttTACAAACACCCAAACATAAAAACCCAACCCTGGTGGTTTGGGATGAGTGAAGGAACAGCTCTAGAACTccttaaatgaatgaatgaatgaatttcaacttatatagcgcctttcttaCAAttaacacgttttacacacaagcacattacacattaacactcatccacccaccggtgagaagcagcagccaatagcgcacagcgtactctcaaccggaaaccaccgtccacctggaggactgcatcggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU301415 lncRNA upstream 7319 37154944 ~ 37155350 (+) True G222136
TU301413 lncRNA upstream 8043 37154232 ~ 37154626 (+) True G222134
TU301383 lncRNA upstream 10732 37066517 ~ 37151937 (+) True G222105
TU301380 lncRNA upstream 109988 37051220 ~ 37052681 (+) True G222103
TU301262 lncRNA upstream 171191 36981075 ~ 36991478 (+) False mnat1
TU301418 lncRNA downstream 283 37163573 ~ 37164290 (+) True G222139
TU301507 lncRNA downstream 221527 37384817 ~ 37389327 (+) True G222214
TU301508 lncRNA downstream 221527 37384817 ~ 37386910 (+) False G222214
TU301511 lncRNA downstream 237961 37401251 ~ 37401683 (+) True G222217
TU301513 lncRNA downstream 242796 37406086 ~ 37406405 (+) True G222219
XM_007247542.3 mRNA upstream 19000 37099398 ~ 37143669 (+) True hif1a
XM_022685063.1 mRNA upstream 81045 37023337 ~ 37081624 (+) True prkch
XM_022685062.1 mRNA upstream 143367 37001307 ~ 37019302 (+) True slc38a6
XM_022684773.1 mRNA upstream 171185 36976406 ~ 36991484 (+) True mnat1
XM_007247546.3 mRNA upstream 219928 36936061 ~ 36942741 (+) True LOC103023682
XM_007247539.3 mRNA downstream 483422 37646712 ~ 37655501 (+) True osr1
XM_022684774.1 mRNA downstream 703505 37866795 ~ 37869273 (+) True LOC111195988
XM_007247538.3 mRNA downstream 908977 38072267 ~ 38075115 (+) True rdh14
XM_015605388.2 mRNA downstream 1094213 38257503 ~ 38265158 (+) False c25h6orf203
XM_022685075.1 mRNA downstream 1097552 38260842 ~ 38265513 (+) True c25h6orf203
TU301271 other upstream 154804 37001085 ~ 37007865 (+) False slc38a6
TU301269 other upstream 154804 37001228 ~ 37007865 (+) False slc38a6
TU301259 other upstream 175015 36976443 ~ 36987654 (+) False mnat1
TU301085 other upstream 753628 36403148 ~ 36409041 (+) True G221878
TU300884 other upstream 1106851 36054875 ~ 36055818 (+) True G221737
TU301771 other downstream 1572669 38735959 ~ 38744182 (+) False LOC103040744
TU301804 other downstream 1731812 38895102 ~ 38898819 (+) False oip5
TU301994 other downstream 2034426 39197716 ~ 39236572 (+) False LOC103047486
TU302104 other downstream 2515212 39678502 ~ 39714015 (+) True G222694
TU302106 other downstream 2515212 39678502 ~ 39714015 (+) False G222694

Expression Profile