RNA id: TU301991


Basic Information

Item Value
RNA id TU301991
length 395
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G222595
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 39174182 ~ 39174576 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CATGTGTTGCACTTTTGAACAAACTTGACTCTGTGGACCTTTTCTTCGTTTTTCTTGCAACTTTATTTGCCCTTGTATTGTGTTAGAGCTGTTTTTACACGAAGCCATTAGCACCACTCTTTCCAGCTCATTCTACTCaggctctctctccctctagcTTCTCCACTCTCTTACACAGAGCCCCTCCTCTCCTAAGCACCTCCTCAGTAACCTAGAGCTCCACCCACagcaatattaacaataataaaagaaagaaatagataaTATTCAAAGCacataaatgatttttaaaataaaagtaaagtaaaataaaattctcTCTAACAAACTAAATATGTCTCAGTGGggtatagaaaaaataaatttatacaCTGGTATTTACTAAGTCGCAACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU301984 lncRNA upstream 12494 39161487 ~ 39161688 (+) True G222589
TU301823 lncRNA upstream 115272 38978249 ~ 39058910 (+) True G222465
TU301805 lncRNA upstream 280851 38890734 ~ 38893331 (+) True G222454
TU301797 lncRNA upstream 315046 38858772 ~ 38859136 (+) True G222449
TU301794 lncRNA upstream 326888 38846577 ~ 38847294 (+) True G222447
TU301999 lncRNA downstream 96686 39271262 ~ 39271357 (+) True G222603
TU301997 lncRNA downstream 99962 39274538 ~ 39274832 (+) True G222601
TU302032 lncRNA downstream 183098 39357674 ~ 39359817 (+) True G222631
TU302033 lncRNA downstream 197071 39371647 ~ 39408437 (+) True G222632
TU302108 lncRNA downstream 546982 39721558 ~ 39724437 (+) True G222695
XM_022685091.1 mRNA upstream 21752 39052496 ~ 39152430 (+) True LOC103040939
XM_007247504.2 mRNA upstream 201073 38941253 ~ 38973109 (+) True dcdc2b
XM_007247505.3 mRNA upstream 233917 38932675 ~ 38940265 (+) True iqcc
XM_007247506.3 mRNA upstream 243423 38917631 ~ 38930759 (+) False ccdc28b
XM_022685096.1 mRNA downstream 23131 39197707 ~ 39271138 (+) True LOC103047486
XM_022685097.1 mRNA downstream 160705 39335281 ~ 39371357 (+) True LOC103047800
XM_022685098.1 mRNA downstream 160720 39335296 ~ 39371359 (+) False LOC103047800
XM_022685099.1 mRNA downstream 199406 39373982 ~ 39376638 (+) True LOC111196043
XM_022685102.1 mRNA downstream 403196 39577772 ~ 39583218 (+) True gphb5
TU301804 other upstream 275363 38895102 ~ 38898819 (+) False oip5
TU301771 other upstream 430000 38735959 ~ 38744182 (+) False LOC103040744
TU301271 other upstream 2166317 37001085 ~ 37007865 (+) False slc38a6
TU301269 other upstream 2166317 37001228 ~ 37007865 (+) False slc38a6
TU301259 other upstream 2186528 36976443 ~ 36987654 (+) False mnat1
TU301994 other downstream 23140 39197716 ~ 39236572 (+) False LOC103047486
TU302104 other downstream 503926 39678502 ~ 39714015 (+) True G222694
TU302106 other downstream 503926 39678502 ~ 39714015 (+) False G222694
TU302391 other downstream 1156928 40331504 ~ 40339211 (+) False zfyve21
TU302370 other downstream 1175231 40349807 ~ 40352656 (+) True LOC103047655

Expression Profile