RNA id: TU302104


Basic Information

Item Value
RNA id TU302104
length 3477
RNA type TUCP
GC content 0.45
exon number 15
gene id G222694
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 39678502 ~ 39714015 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

taaactaactcagaaatggtcaaaaaaaaggagtaaaaacccaaaagaaagagagaaaaaaaaagaaaagaacagcaTTTAAATACCAAGACATGGTGTTCAGTAATACCTCTCGACAGACTGGATACTCTGTGACAGAACctaaagaagaaaataataataaatgtataatatatataacgcTAAGGACTATTCAGTGACTGCATATTTGAGTGtatacactttaaatatatataacgcTCATCCATACAGTTACTGTTTCTACTAGATACAGAACTGAGTGCTGCATTCAGTTAGAATGAACAGATTAACACTATAAAGATCCtccctcagacacacacacacacgcacgcacagacatgaagtttgtgtgtgtgtgcgcactcTATACGTGCCCATGACGTTTAACAGTGTGAATCTCGGTTTGGTTAGATGGCTGTGTGTGCAGCAGTggtgtcttgtgtgtgtgtgtgtgtgtgtgtgtgttttattagtgAGCTGTTATTTTACTGGTACCAGTGCCAGACTGGTGCTGAAGAGAGGAACGTCCAGAATACCAAACCAGGACAGAGGTGATCAAAAACTCCGGGCAGCACCCGCAGAACCCAACGGTAAACTCGATCTAAAACACAGAACGCTgagctggtgtgtgtttgtgtgtatttgtgtgtgtgtttttcttgctGGTTACTGTATCTGGAACAACTATTCAGGCTTTATTTGCAAACTGAGGGAGGAGAGAAGAGCATGAGAAAGCAAGAGTCTGCGAGAGAGCGAGACTCagcgagagagcacaattaaaTTGCAAACTGagggaggagagaagagaacgCAAGTGTGCACGAGAACACAAATAAACTGCAAATTGAGGAAGGACAGAGAATGCGAGAGAGCACAATCAAATTGCAAACTGAGGGAGGAGTGTGCAAGGGAGAAAACAGATCAGTAAGAGCATGTGTGACAGGGCAAGAGAAAGCGCACAAGAGCGAGAGCGCAAGAGAGAACAAAAAGAAATGCAATGAATGTGAGAAagccagataaaaaaaaaagaagaggaaagcACATGtaagaaggagagagaatgagtgtgtgtgaagtgagAGTGCGCCAAtacgagtgtgtgagtgtgtgtgtgtgtgtgtgtactgtccAGGTTAACAGGAACGAGTCGTTTTGTCTTGGTTGGAGGGTCCGGCTAGCTTCATTTGCTGCTGattttgttggtgtgtgtgtttgtgtgtgttttttttttttaatctccacAGTAGCAGTTCATTTCAAGTCCGACTGTCTGGTCAAGTCCTTTTCCTCCCGCtccagcgagggggcggggctgctTTTAAAcgtattttctctttttcagtccttttttaaacctattttattttcttttcagtgTAATATTTCCAAGGGAAAAAatagcaggaaaaaaaataaagttatttacaGTGCTGCTGAAATAATGAAACAGACGATGGGAATCTACTGTAAAGTAAGTCGCACAATACAGAAAGGAaaacaaatttaataataataatataataataataattataataaaacaaaaacccCAAAAACGCGACTCTGCGGGGCACCGGCCAACATTCTGGGAGTGTTTTCCGGAGGTGTTGGGAAAGCGGTCCAGGGCGTCTGAGCGCTTCGTTAAGTTGGAATAATGACGTCGCTCCGCAGGCCTCGCTTCAGCTCTAGGTCCTCCAGCTTCTTCCACAGCTCCTCCCGttccttctccttcttcttctctCTCTGACGATCTGATTTGTAGGTGGCAGTGAGTTCATCAAACAAAGTGCTGTTCATTTCCATGAAGGCTTTCAGAACGTTGTACACTAAAGCTACGATCGCCGGATTCCAGTGTTCTTTGGAAATCCGGTACAGACTGGCGAACATGATGGGCAGAATGACGTTGGAGTTCTCTTCGATAAGACTCATGATGTACTCGTTATTCCAGTAGTACAGAGCCCTCTCAGCcacCTGAAAGTGTGGGCTGGACACGCATCTGGAGATCTGCTTGAAAAGTGGCTCCTGGATCTTCACAAACTGCGTGGGCTCAATCACATCCAAGATCTCCTCCAGCTCCCCCAAGAACATCacCTCTTTTTGACTGCACGTCTTTGGCCAGAACTTGAGAAGGCCTCTAATGACTGGTTCTGTTAATGTTGGGTCTTTCTCTAGGAACTGTACAATACAATACGCCAACTGTgcgtggaagagagagagactcctgACTGTGTGGAGAGGAATCAACACTTTCACCAGGAACTGCTTATGCTCCGCCTTCAGAGGTAAAGCAAAGCCATTGATAATgCTTCCCAAAATTTCCAACAACTCGGCTACTCCGTTGAAGTGCTCAGTTTCATAAACAAAACgtagaaaaatattatttatttgttttcgtATAAAAGCCCTCAGCCCCAGGAATTTGCCGTAGATTCTGTGTAAGACTGTCTTCAGATAGTCTCGCTCTCGTGGGTCCTCACTGTCAAACAGTTCCAGCAGCTGTAAGACAAACTTCTGGTCTATGTACTTTTTGGCAATGCTGGGCTGGAACTCCTGACTctccaaaaaacgaataaagaACTCGTACACCAGCTGTAAGTGTGGCCACGAGGCCTCTAAAGTGGGCTCGTCCTCCTCTGGGTCAAACTCGTTGCTGTCGCTGGGCGGAAGAGTCCGGAATATGTTGTAGGACACATTTTGACGACCTCCGGGTAGGCCTGCTCTGTGAGGTAGCCCCGGCTGACCGTGACATAGTCCACCAGCTCGTTCAGTGTGGACCGCTTGTACTCTTTCATCTTCAGGTCAGAAAGCGTGTCCATGAAATCGAACACcgtgcagcactgctgcagcttCTTCAGGAACAAATCCGGCTGCTCCTGAGCAGGGACGTctttGAGCAGAGGGAGGGGTGTGAGCTCAATGGGTTTGCCCTGAGAGCGAAACTGAGAGGAACTCTGGGAACGCTTCTGCTTGGCCTTCCTGACAGATTTTCGGGAAAACCCGTCCACTTTGTCCACTGATGGAGGCGTTGTGGCTGCTGAGGACATAGccCTTGATCCTCTGTGTTTCTGAGAACgaagatggtgatgatggtgagtGATCCTGTATTCACACTTCCTTACCAACACAAATATGCCCCCAATCCCGTTTCAAGTgtgagaaaaaacaagaaagtgGGAGAAAAAATGCCTTAATCTTGGCCTTTAAACCGAGCCAATCCCACCACTAGCTTCGCTTTTCACCTCCTAGTGAAATAATCCCATCAGTGCTGAAATATGGACGCATTTAAAACGAAAACACGCGGCTAAAACAGACACATGTCGCCCTTCTTCTGTCGAAACCTCCTCTGCGTCCTCTGCGTGTTTATATTTCTCTCAATAGTCTGTTTAATTCCAGGGGAATGATCTCCTTTTACCCTATTGTCAATACTACAGGGCTCagtccacacaccacacataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302033 lncRNA upstream 270065 39371647 ~ 39408437 (+) True G222632
TU302032 lncRNA upstream 318685 39357674 ~ 39359817 (+) True G222631
TU301997 lncRNA upstream 403670 39274538 ~ 39274832 (+) True G222601
TU301999 lncRNA upstream 407145 39271262 ~ 39271357 (+) True G222603
TU301991 lncRNA upstream 503926 39174182 ~ 39174576 (+) True G222595
TU302108 lncRNA downstream 7543 39721558 ~ 39724437 (+) True G222695
TU302124 lncRNA downstream 25062 39739077 ~ 39763389 (+) True G222708
TU302133 lncRNA downstream 42425 39756440 ~ 39761263 (+) True G222715
TU302154 lncRNA downstream 89230 39803245 ~ 39805802 (+) True G222734
TU302150 lncRNA downstream 91880 39805895 ~ 39808427 (+) True G222731
XM_022685102.1 mRNA upstream 95284 39577772 ~ 39583218 (+) True gphb5
XM_022685099.1 mRNA upstream 301864 39373982 ~ 39376638 (+) True LOC111196043
XM_022685098.1 mRNA upstream 307143 39335296 ~ 39371359 (+) False LOC103047800
XM_022685097.1 mRNA upstream 307145 39335281 ~ 39371357 (+) True LOC103047800
XM_022685096.1 mRNA upstream 407364 39197707 ~ 39271138 (+) True LOC103047486
XM_022685111.1 mRNA downstream 372070 40086085 ~ 40110675 (+) True cdh23
XM_022685112.1 mRNA downstream 372070 40086085 ~ 40110675 (+) False cdh23
XM_007238500.3 mRNA downstream 484373 40198388 ~ 40207129 (+) True eif3l
XM_007238501.3 mRNA downstream 494391 40208406 ~ 40217036 (+) True LOC103047342
XM_022685147.1 mRNA downstream 617058 40331073 ~ 40339652 (+) True zfyve21
TU301994 other upstream 441930 39197716 ~ 39236572 (+) False LOC103047486
TU301804 other upstream 779683 38895102 ~ 38898819 (+) False oip5
TU301771 other upstream 934320 38735959 ~ 38744182 (+) False LOC103040744
TU301271 other upstream 2670637 37001085 ~ 37007865 (+) False slc38a6
TU301269 other upstream 2670637 37001228 ~ 37007865 (+) False slc38a6
TU302391 other downstream 617489 40331504 ~ 40339211 (+) False zfyve21
TU302370 other downstream 635792 40349807 ~ 40352656 (+) True LOC103047655
LOC103047655 other downstream 635866 40349881 ~ 40352465 (+) False LOC103047655
TU302648 other downstream 1351654 41065669 ~ 41073316 (+) True LOC103045954
TU302649 other downstream 1351654 41065669 ~ 41073316 (+) False LOC103045954

Expression Profile