RNA id: TU302314


Basic Information

Item Value
RNA id TU302314
length 1253
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G222817
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 40040422 ~ 40041726 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tttttttctaatatactgtaattctacctccattatttaaatgcagcagctagtgtaaccactgcttatattgtcaaatttttatatccccacagaattcgttttttaaaacgtttttcagttctattcaaaaagGTGTGGTTACTGTAAAAGGGTGTGGTTACCCCTAGCCggggcgggaccatagactgtgtgagctctgtggaggcagccctcaggggcggggttatttaaatgagcaggctgtctctccacagtctttctccctcctctggtctctactgcgctctacagactcaggtttcaggatcaacaacatggaggaagattttagcttcatttttattgaatgaatgtgaacagcgacacggcgtccatcttttttacagtctgtgTTTGGGGATAAGGTGATCGATCATCCAACATGCTGACCTCACTTATGCttctcttgttgctgaatgcaatcaaatcctcacagcaaagctctaaaaaaaaaaaaattaatagaaaGTCTTCCCCTTGCGTTTTTACTccagcaaaagcaggataaacgctttttaataatacataaaatacttCAGTTCAGAAGAAGCAATAAAAGAGCAGGTCTGGCAAtactttagtccagtggaggtgtgtgtgtagcaggTCGTCTGTGAATggtgtattgtagtgtagtgtgtgtatgtgtgtgtgtctctataTCTCAGTAGCGTACTGTAGTAAACAGGGCAGGGTGATCTGGACCTGCGGGTCTCTCCGGTCCTCCTCCAGCTGTAGGGACAGTTTGGACGGGAGTCTCTGGTGGAGGCTGATGGAGGTGGAGGTCTCCTGAAGGACGCCGCTGAGGAGAAGGATCTCCGCACTGAGCCCAGACGCTTCCACAGCTTCAGCTGAGGCTCGCTGGGTAAAGACCGGCCGCAGTAGAGCACGTCTCCTGGACCACAGCCTCCCCCGTCCAGCTCCTCAGACCTCCTGGAGGAGCAGCACAGCGCCAGGAGGCTCACGCAGCCCCCGAACAGAAGGAAGAGGCAGAGCGTGACGATGATGGTGGGCAGCGGGTGGTGAAGGGTGAAGAAAGGAGGAaggagaggagggagagggatggagagattgGATGAAGGAGTGGAGAGGTTGTAGAGGGAGGGAGTAAGGGAAGAGTAAAGAGGAGTAGAGTCGTTCAGAGTGGCGTTTTGTAGGATGTCCATGTTGGATCTGTTGGaggaaaaaacaggaaaagaagagaaagctGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302152 lncRNA upstream 229596 39808569 ~ 39810826 (+) True G222732
TU302150 lncRNA upstream 231995 39805895 ~ 39808427 (+) True G222731
TU302154 lncRNA upstream 234620 39803245 ~ 39805802 (+) True G222734
TU302124 lncRNA upstream 277033 39739077 ~ 39763389 (+) True G222708
TU302133 lncRNA upstream 279159 39756440 ~ 39761263 (+) True G222715
TU302316 lncRNA downstream 8781 40050507 ~ 40113663 (+) True G222819
TU302317 lncRNA downstream 20598 40062324 ~ 40066992 (+) True G222820
TU302319 lncRNA downstream 20598 40062324 ~ 40066992 (+) False G222820
TU302356 lncRNA downstream 199032 40240758 ~ 40241004 (+) True G222850
TU302375 lncRNA downstream 267222 40308948 ~ 40309775 (+) True G222869
XM_022685102.1 mRNA upstream 457204 39577772 ~ 39583218 (+) True gphb5
XM_022685099.1 mRNA upstream 663784 39373982 ~ 39376638 (+) True LOC111196043
XM_022685098.1 mRNA upstream 669063 39335296 ~ 39371359 (+) False LOC103047800
XM_022685097.1 mRNA upstream 669065 39335281 ~ 39371357 (+) True LOC103047800
XM_022685096.1 mRNA upstream 769284 39197707 ~ 39271138 (+) True LOC103047486
XM_022685111.1 mRNA downstream 44359 40086085 ~ 40110675 (+) True cdh23
XM_022685112.1 mRNA downstream 44359 40086085 ~ 40110675 (+) False cdh23
XM_007238500.3 mRNA downstream 156662 40198388 ~ 40207129 (+) True eif3l
XM_007238501.3 mRNA downstream 166680 40208406 ~ 40217036 (+) True LOC103047342
XM_022685147.1 mRNA downstream 289347 40331073 ~ 40339652 (+) True zfyve21
TU302104 other upstream 326407 39678502 ~ 39714015 (+) True G222694
TU302106 other upstream 326407 39678502 ~ 39714015 (+) False G222694
TU301994 other upstream 803850 39197716 ~ 39236572 (+) False LOC103047486
TU301804 other upstream 1141603 38895102 ~ 38898819 (+) False oip5
TU301771 other upstream 1296240 38735959 ~ 38744182 (+) False LOC103040744
TU302391 other downstream 289778 40331504 ~ 40339211 (+) False zfyve21
TU302370 other downstream 308081 40349807 ~ 40352656 (+) True LOC103047655
LOC103047655 other downstream 308155 40349881 ~ 40352465 (+) False LOC103047655
TU302648 other downstream 1023943 41065669 ~ 41073316 (+) True LOC103045954
TU302649 other downstream 1023943 41065669 ~ 41073316 (+) False LOC103045954

Expression Profile