RNA id: TU302317


Basic Information

Item Value
RNA id TU302317
length 2033
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id G222820
representative True

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 40062324 ~ 40066992 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cacacacacacacacacagtagggCCCGACTGATATATTGGTTGGCAGCATTAACAGCATCTGAATAGATCAGTTTTAGGTATAAATAGCAGTTTAGCACCGATATTCAtggcttgtttttttatcatacagACTCTTCTGATTATAtaagaaaaacatgaattatGAACAATGATATAAAATATGGCAGTGAAAAATAATGATGAGTGTGTGCTTCAGTAACCAGCAAATCAGTTACCagcaaaaaaactcaaaacCCTCATCTTACAAAACATTTATCCATCAGAGCATCCAGTTATTCACACATCCACAAATACAAGCTTCTAAACATCAATCTGCCCAGTGAAGACTCTCTTCAATAACAGCTgcagctgtctctctctcacacactcacacacacacactcattcacacacaaacaaacacatacatcCATTGAAAAAATGAAACACATCTTGCCTTTgtacaaatacagtataaaacatttacaaaatcatatttatatatatatttcgaGTATCTTAAATCTAAAAGTGGTGGATCTTTGCAGGTCATGTGCAAGTTATCTGCAACTGGAGgtaaaactgcattaaaacGACAGAGTGACCGAGCATCACCTGCCCGTGCTACTGAACACTGAAGCACCTAAAACTGTCTGTCTGCTGAagcatttcttattatttctttattattactgAAGCTCTGAGTTTGGGGCGTGAGAGGGGCGGGACGTGAGGTGTGAGAGGGGCGGGGCGTGAGGTTCCTGAgcctgttccatgacttttggtataTCTGTGTACTTCTGTGTAATGTCTGTATgtatcatttttagtttttcgATATTTTTGATATATTTCGAGTTCGATAAGTAGATACAGTCATGGTACACTAGCAGAGCCTCCTAAACACACTAAACATCTAAATCAGAAAAAGATCAGAAAAACCTCTCctggggctccgagtggtccagcgagcgctatgatcaggagatcgcgggtttgaatcctggttatgcagctttCAATCGGCTATCGATGatctgatgtatcggaaccgagttgaGTCGCTGTAGGCgttttcctccaagcgttagcgctgtgatgctactcggcaatgctaaagcatcatcagcagcagttcaaaaagaggcggagtctgacttcacatgtgtcagaggaggcgtggcttagtcttttttttaaccttcCCGGTGTTTGGGGGGGGTGTTACGAGTGATGgggaggagtcctaataagtggctTATTCAGttattggccgtgtaaattggggagaaaatataGGGATAAAATTTTTTCTCCAACCCTAAACTCTGCTCTACACATCCAGCGGTTTCAGAGATTGAGCAGAGAGCTGGAAGGAAATGAGaatctgcttctctctcttttaaagaGAACAGTCTGACCTCTGATTGAAACCTTCTTTCCCTAAATCCACCCCTCCATTATAGAACATTCTGGTCTGTCTGTGCCGTCAGACAGCGGCCGCAGTTCCCCTCCAACATAAAGCAGGTGAGTCTTCAGGATGTTGTTGCAGGTGGGGGACCTGTGTCTCCACCAGTCACAGAGTAAAGGttaaggaaagagagagggatagagtgGGCGTAGAAGAAAAGATAAAGCGTGGGGAGGGTCCACACTGCTGAGACACAACCAACAGACTTCTTCATTCTACACCTGCAGGAAGTCGGGGGATTCTGGGATCGGATCTTGTGCAGGGAAGAACACATCACCGTGTGGGTTCGGGGTTTGGGGGGTTCCAGGGTCTGACAGCAGGTGACGCCCCGTTTCAGATGACTGGCGGGTCAGGATCTGAGACAGGGTCCGAGGTTTGGGCTGAGGAGTACCGGCCATGAACACAGGGTTCTCATGTCCCTGAGCCTCGCTGGAGAAACACATCCAGAGAACCATgatgagaaaacagagagagacagacagacagagagacacagaaacagagagacagaaacagagagacagagagacttaTTTTTCCTTCTTCAGCAGTAGTTTCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302314 lncRNA upstream 20598 40040422 ~ 40041726 (+) True G222817
TU302152 lncRNA upstream 251498 39808569 ~ 39810826 (+) True G222732
TU302150 lncRNA upstream 253897 39805895 ~ 39808427 (+) True G222731
TU302154 lncRNA upstream 256522 39803245 ~ 39805802 (+) True G222734
TU302133 lncRNA upstream 301061 39756440 ~ 39761263 (+) True G222715
TU302356 lncRNA downstream 173766 40240758 ~ 40241004 (+) True G222850
TU302375 lncRNA downstream 241956 40308948 ~ 40309775 (+) True G222869
TU302374 lncRNA downstream 242888 40309880 ~ 40312837 (+) True G222868
TU302394 lncRNA downstream 274562 40341554 ~ 40342323 (+) True G222884
TU302395 lncRNA downstream 274562 40341554 ~ 40342874 (+) False G222884
XM_022685102.1 mRNA upstream 479106 39577772 ~ 39583218 (+) True gphb5
XM_022685099.1 mRNA upstream 685686 39373982 ~ 39376638 (+) True LOC111196043
XM_022685098.1 mRNA upstream 690965 39335296 ~ 39371359 (+) False LOC103047800
XM_022685097.1 mRNA upstream 690967 39335281 ~ 39371357 (+) True LOC103047800
XM_022685096.1 mRNA upstream 791186 39197707 ~ 39271138 (+) True LOC103047486
XM_022685111.1 mRNA downstream 19093 40086085 ~ 40110675 (+) True cdh23
XM_022685112.1 mRNA downstream 19093 40086085 ~ 40110675 (+) False cdh23
XM_007238500.3 mRNA downstream 131396 40198388 ~ 40207129 (+) True eif3l
XM_007238501.3 mRNA downstream 141414 40208406 ~ 40217036 (+) True LOC103047342
XM_022685147.1 mRNA downstream 264081 40331073 ~ 40339652 (+) True zfyve21
TU302104 other upstream 348309 39678502 ~ 39714015 (+) True G222694
TU302106 other upstream 348309 39678502 ~ 39714015 (+) False G222694
TU301994 other upstream 825752 39197716 ~ 39236572 (+) False LOC103047486
TU301804 other upstream 1163505 38895102 ~ 38898819 (+) False oip5
TU301771 other upstream 1318142 38735959 ~ 38744182 (+) False LOC103040744
TU302391 other downstream 264512 40331504 ~ 40339211 (+) False zfyve21
TU302370 other downstream 282815 40349807 ~ 40352656 (+) True LOC103047655
LOC103047655 other downstream 282889 40349881 ~ 40352465 (+) False LOC103047655
TU302648 other downstream 998677 41065669 ~ 41073316 (+) True LOC103045954
TU302649 other downstream 998677 41065669 ~ 41073316 (+) False LOC103045954

Expression Profile